Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_027645.1 Length=4631 Score E Sequences producing significant alignments: (Bits) Value seq9 104 7e-19 >seq9 Length=4117 Score = 104 bits (114), Expect = 7e-19 Identities = 246/364 (68%), Gaps = 16/364 (4%) Strand=Plus/Plus Query 1099 ACGCCGCAGGGTAACTTGGCTGCTTTCGGGCATTAC--CTTGCG--CCGAATCATGGTTT 1154 || || ||||||||| | || |||||||| ||| || || | ||||| || || Sbjct 3476 ACCCCTCAGGGTAACCTTGCAGCTTTCGG----TACTGCTAGCCTACATAATCACGGCTT 3531 Query 1155 TACGCAGAGCTTT-ACCGAGCATGGTCACATCATCGGTTTGGTGGCGGTTCGTGCGGATC 1213 | | | |||| ||||| || | ||||||||| |||| | || ||||| |||| Sbjct 3532 CTCAAA-ATCTTTCACCGAACACTGCATCATCATCGGCATGGTTTCTGTCCGTGCCGATC 3590 Query 1214 TGACGTATCAGCAGGGCATGCGCAAGATGTGGTCTCGGTTGACTAGGTATGACTTTTATT 1273 | || ||||| |||||| | | |||| || || | || | |||||||| || | Sbjct 3591 TAACATATCAACAGGGCCTTAACCGAATGTTCTCGCGTTCTACGCGCTATGACTTCTACT 3650 Query 1274 TCCCGGTTTTTGCGATGCTTGGCGAGCAGGCTGTTTTGAACAAGGAGATTTATTGCGATG 1333 || | | | |||||||| || || || | ||||| || || | | |||| Sbjct 3651 GGCCTGCACTATCTCACCTTGGCGAACAATCTATTCTTAACAAAGAAATCTTCTCTGATG 3710 Query 1334 GTTCGGCCAACGATACTGCTGTATTTGGTTATCAGGAAAGGTGGGCTGAGTACCGCTACA 1393 |||| |||| ||| ||| ||||| || ||||| ||| | | || || |||||||||| Sbjct 3711 GTTCAGCCACCGACGATGCCGTATTCGGCTATCAAGAACGCTACGCGGAATACCGCTACA 3770 Query 1394 ACCCCTCTCAAATTACCGGCCTTTTCCGCTCTACTTATGCGAC--GC-CGCTGGATGCTT 1450 | || ||| |||||| ||| || ||||||| |||| || || | || ||||||| Sbjct 3771 AACCTTCTACCATTACCTCCCTGTTTCGCTCTA---ATGCAACAGGCTCACTCGATGCTT 3827 Query 1451 GGCA 1454 |||| Sbjct 3828 GGCA 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14706680261340