Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_028993.1 Length=4468 Score E Sequences producing significant alignments: (Bits) Value seq3 136 1e-28 seq9 134 4e-28 seq2 131 5e-27 >seq3 Length=2115 Score = 136 bits (150), Expect = 1e-28 Identities = 350/532 (66%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 838 GCTACTGCTGCAACTATTAATCAGTTGCGTCAGTCATTTCAGATTCAAAAACTTTTAGAG 897 |||||||| ||||| ||||| | | | || | || ||| | ||| ||| |||| Sbjct 1215 GCTACTGCGGCAACAATTAACGAACTAAGACAAGCGTTCCAGGTACAACGCCTTCTAGAA 1274 Query 898 CGTGATGCTCGTGGTGGTACACGTTATACGGAGATTATTCGTGCTCATTTCGGTGTTATT 957 ||||| || ||||| || || || |||| ||| | || |||| ||||| || | Sbjct 1275 CGTGACGCCCGTGGCGGAACTCGATATATCGAGCTAATCAAATCTCACTTCGGCGTCTCT 1334 Query 958 TCTCCTGACGCTCGTTTACAGCGTCCTGAATATCTTGGTGGCGGCTCTACTCCAGTTATC 1017 ||||||||||| || |||| || || ||||| || || |||||||| ||||| || | | Sbjct 1335 TCTCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGCGGCTCAACTCCGGTAAAC 1394 Query 1018 ATTAATCCTATTGCCCAAACATCGGGTACAGGTGTTACTGGCGGTAGTACTCCTCTCGCT 1077 |||| ||| | | ||| ||| || ||| || || || |||| | Sbjct 1395 ATTACTCCGGTAACTCAACAATC---------TGCCTCTGACGCTACAACGCCTCAAGGC 1445 Query 1078 AATCTTGCTGGTGTTGGTACTGTCCTCGCCTC-TGGTCATGGCTTTACTCAGTCGTTCAC 1136 || ||||| || | ||||| | || | | || ||||| |||||| | | || || || Sbjct 1446 AACCTTGCAGGCTTCGGTAC-GGCCACCCTTCGCGGTCACGGCTTTTCAAAATCCTTTAC 1504 Query 1137 TGAACATGGCGTAATTATTGGTTTGGTTAGTATTCGTGCTGATTTGACTTATCAACAGGG 1196 ||||| || | || ||||| |||| | ||||| ||| | ||||| || ||||| Sbjct 1505 CGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACTTACCAGCAGGG 1564 Query 1197 TTTGCATCGTATGTGGTCTCGTTCCACACGTTATGATTTTTATTTCCCTGCTTTTGCTAT 1256 | | || |||| || |||||||| || ||||| || || | ||||| | || Sbjct 1565 CCTAAACCGAATGTTCTCGCGTTCCACGCGCTATGACTTCTACTGGCCTGCACTCTCTCA 1624 Query 1257 GTTGGGTGAACAGCCTGTTTATAATCGTGAGTTGTATATTGACGGTTCTGCTAACGATGG 1316 | || ||||| | | |||| || | | | ||| |||||| | || || | Sbjct 1625 CCTTGGCGAACAATCCATCCTTAATAAAGAAATCTTTTCTGATGGTTCTACCAATGACGA 1684 Query 1317 TAATGTTTTTGGTTATCAAGAGCGTTGGGCTGAATATCGTTACAAGCCTTCT 1368 | || || || |||||||| |||| || ||||| || || || |||||| Sbjct 1685 TGCCGTCTTCGGCTATCAAGAACGTTATGCGGAATACCGCTATAAACCTTCT 1736 >seq9 Length=4117 Score = 134 bits (148), Expect = 4e-28 Identities = 350/533 (66%), Gaps = 13/533 (2%) Strand=Plus/Plus Query 838 GCTACTGCTGCAACTATTAATCAGTTGCGTCAGTCATTTCAGATTCAAAAACTTTTAGAG 897 |||||||| ||||| ||||| | | || ||| | ||||| | ||| |||||||| Sbjct 3257 GCTACTGCCGCAACAATTAACGAACTTCGCCAGGCGTTTCAAGTACAACGCCTTTTAGAA 3316 Query 898 CGTGATGCTCGTGGTGGTACACGTTATACGGAGATTATTCGTGCTCATTTCGGTGTTATT 957 ||||| || || || || || || |||| || | || | || ||||| || | Sbjct 3317 CGTGACGCCCGCGGCGGCACTCGATATATCGAACTAATAAAATCACACTTCGGCGTCTCT 3376 Query 958 TCTCCTGACGCTCGTTTACAGCGTCCTGAATATCTTGGTGGCGGCTCTACTCCAGTTATC 1017 || |||||||| || |||| || || ||||| || || |||||||| ||| | || | | Sbjct 3377 TCCCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGCGGCTCAACTGCGGTAAAC 3436 Query 1018 ATTAATCCTATTGCCCAAACATCGGGTACAGGTGTTACTGGCGGTAGTACTCCTCTCGCT 1077 |||| || | | || ||| | | ||| || |||| || |||| | | Sbjct 3437 ATTACCCCAGTAACTCAGCAATCTGCTTCAGATGCTACT---------ACCCCTCAGGGT 3487 Query 1078 AATCTTGCTGGTGTTGGTACTGTCCTCGCCTC--TGGTCATGGCTTTACTCAGTCGTTCA 1135 || ||||| | | | ||||||| || |||| | ||| ||||| | | || |||| Sbjct 3488 AACCTTGCAGCTTTCGGTACTG--CTAGCCTACATAATCACGGCTTCTCAAAATCTTTCA 3545 Query 1136 CTGAACATGGCGTAATTATTGGTTTGGTTAGTATTCGTGCTGATTTGACTTATCAACAGG 1195 | ||||| || | || || || ||||| | | ||||| ||| | || |||||||||| Sbjct 3546 CCGAACACTGCATCATCATCGGCATGGTTTCTGTCCGTGCCGATCTAACATATCAACAGG 3605 Query 1196 GTTTGCATCGTATGTGGTCTCGTTCCACACGTTATGATTTTTATTTCCCTGCTTTTGCTA 1255 | | | || |||| || ||||| || || ||||| || || | ||||| | || Sbjct 3606 GCCTTAACCGAATGTTCTCGCGTTCTACGCGCTATGACTTCTACTGGCCTGCACTATCTC 3665 Query 1256 TGTTGGGTGAACAGCCTGTTTATAATCGTGAGTTGTATATTGACGGTTCTGCTAACGATG 1315 | || ||||| || || ||| || | | ||| ||||| || | ||| | Sbjct 3666 ACCTTGGCGAACAATCTATTCTTAACAAAGAAATCTTCTCTGATGGTTCAGCCACCGACG 3725 Query 1316 GTAATGTTTTTGGTTATCAAGAGCGTTGGGCTGAATATCGTTACAAGCCTTCT 1368 | || || || |||||||| || | || ||||| || ||||| |||||| Sbjct 3726 ATGCCGTATTCGGCTATCAAGAACGCTACGCGGAATACCGCTACAAACCTTCT 3778 Score = 80.6 bits (88), Expect = 8e-12 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 103 AAGACGACTTTTGATGCTGGTTATCTTGTTCCTGTTTATGTGGATGAGGTTCTTCCCGGT 162 || || |||||||| || || | || | ||| | | ||| || || | |||||||| Sbjct 2516 AAAACTACTTTTGACGCCGGAAAACTAATCCCTATCTTTGTCGACGAAGCACTTCCCGGC 2575 Query 163 GATACATTTAATTTGAATATGACTGCTTTTGCTCGTCTGGCTACTCCTTTTTTCCTGTT- 221 || || || || | || |||||||| ||||| ||||| || || ||| || || | Sbjct 2576 GACACTTTCAAACTCAACATGACTGCCTTTGCACGTCTTGCCACACCTATTAACCCCATC 2635 Query 222 ATGGATAATATGGTTTTGGATAGTCtttttcttttttGTTCCTAACCGTTTGATTTGGGA 281 |||||||| ||| |||| | | ||| ||| | ||| || | ||| | | ||||| Sbjct 2636 ATGGATAACATGTACATGGACACGCATTT-CTTCTCTGTACCAATGCGTCTACTATGGGA 2694 Query 282 TAACTGGCAAAAGTT-TATGGTGAGCAGCGTAACCCTGGTGATTC 325 ||||||||||| || ||||||| || |||| || ||||| Sbjct 2695 CAACTGGCAAAAATTCAATGGTGAACAAATCGACCCCGGCGATTC 2739 >seq2 Length=2125 Score = 131 bits (144), Expect = 5e-27 Identities = 349/532 (66%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 838 GCTACTGCTGCAACTATTAATCAGTTGCGTCAGTCATTTCAGATTCAAAAACTTTTAGAG 897 ||||||||||| || || || | | || || | || || | ||| || ||||| Sbjct 1225 GCTACTGCTGCTACAATCAACGAACTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAA 1284 Query 898 CGTGATGCTCGTGGTGGTACACGTTATACGGAGATTATTCGTGCTCATTTCGGTGTTATT 957 ||||| || ||||| || || || || | ||| |||| |||| ||||| || | Sbjct 1285 CGTGACGCCCGTGGCGGAACTCGATACATCGAGCTTATAAAATCTCACTTCGGCGTCTCT 1344 Query 958 TCTCCTGACGCTCGTTTACAGCGTCCTGAATATCTTGGTGGCGGCTCTACTCCAGTTATC 1017 ||||||||||| || ||||| || || ||||| || || |||||||||| || || | | Sbjct 1345 TCTCCTGACGCACGATTACAACGCCCCGAATACCTCGGCGGCGGCTCTAGCCCGGTAAAC 1404 Query 1018 ATTAATCCTATTGCCCAAACATCGGGTACAGGTGTTACTGGCGGTAGTACTCCTCTCGCT 1077 |||| || | | ||| ||| || ||| || || ||| |||| | Sbjct 1405 ATTACCCCGGTAACACAACAATC---------TGCCTCTGACGCTACTACGCCTCAAGGC 1455 Query 1078 AATCTTGCTGGTGTTGGTACTGTCCTCGCCTC-TGGTCATGGCTTTACTCAGTCGTTCAC 1136 || ||||| || | ||||| | || | | || ||||| ||||| | | || ||||| Sbjct 1456 AACCTTGCAGGCTTCGGTACAG-CCACCCTTCGCGGTCACGGCTTCTCAAAATCCTTCAC 1514 Query 1137 TGAACATGGCGTAATTATTGGTTTGGTTAGTATTCGTGCTGATTTGACTTATCAACAGGG 1196 ||||| || | || ||||| |||| | ||||| ||| | || ||||| ||||| Sbjct 1515 CGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACCTATCAGCAGGG 1574 Query 1197 TTTGCATCGTATGTGGTCTCGTTCCACACGTTATGATTTTTATTTCCCTGCTTTTGCTAT 1256 | | || |||| || ||||| ||||| ||||| || || | ||||| | || Sbjct 1575 CCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTTCTACTGGCCTGCACTCTCTCA 1634 Query 1257 GTTGGGTGAACAGCCTGTTTATAATCGTGAGTTGTATATTGACGGTTCTGCTAACGATGG 1316 |||| ||||| | | |||| || | | | ||| |||||||| | || | Sbjct 1635 CCTGGGCGAACAATCCATACTTAATAAAGAAATCTTTTCTGATGGTTCTGCCACTGACGA 1694 Query 1317 TAATGTTTTTGGTTATCAAGAGCGTTGGGCTGAATATCGTTACAAGCCTTCT 1368 | || || || |||||||| || | || ||||| || || || |||||| Sbjct 1695 TGCCGTCTTCGGCTATCAAGAACGCTATGCGGAATACCGCTATAAACCTTCT 1746 Score = 82.4 bits (90), Expect = 2e-12 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 459 TCGTGCCTATAATCTTATTTGGAATGAATGGTTTAGAGATCAGAATTTACAAAATTCTGT 518 ||| ||||| ||||| | ||||| |||||||| | || | || |||||| | ||| | Sbjct 855 TCGAGCCTACAATCTCGTCTGGAACGAATGGTTCCGTGACGAAAACTTACAAGACTCTTT 914 Query 519 AACCGT-TGATACTGGTGACGGTCCTGATGCGTCGGCTTCAACTAATTACACGTTGTTGC 577 ||| || | | | ||||||||||||||| || ||||| | | ||| | | Sbjct 915 AACAGTCTCACGC-GGTGACGGTCCTGATCCG------TCAACCGACTTCACTCTTCAAC 967 Query 578 GCCGTGGTAAGCGGCATGATTATTTTACTTCTGCACTTCCATGGCCTCAGAAGGGTTCTT 637 | || || || || || || || || ||||||||| | || |||||||| || || || Sbjct 968 GTCGAGGCAAACGCCACGACTACTTCACTTCTGCATTACCTTGGCCTCAAAAAGGCGCTG 1027 Query 638 CTGTAACTTTGCCATTAGGTACCAGTGCTCCTAT 671 | ||| ||||| ||||| || ||| ||||| Sbjct 1028 CCGTACAATTGCCTTTAGGCACTTCTGCACCTAT 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14185098694195