Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_028994.1 Length=4273 Score E Sequences producing significant alignments: (Bits) Value seq9 143 7e-31 seq3 129 2e-26 seq2 107 5e-20 >seq9 Length=4117 Score = 143 bits (158), Expect = 7e-31 Identities = 359/539 (67%), Gaps = 15/539 (3%) Strand=Plus/Plus Query 850 GCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATTTCAGATT 909 || ||| ||||| ||| ||||| ||||||||||| || | || || | ||||| | Sbjct 3242 GCTGATCTATCTAAAGCTACTGCCGCAACAATTAACGAACTTCGCCAGGCGTTTCAAGTA 3301 Query 910 CAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTATACGCTCA 969 ||| ||| | ||| | || ||||| ||||| ||||| |||| ||| | ||| ||| Sbjct 3302 CAACGCCTTTTAGAACGTGACGCCCGCGGCGGCACTCGATATATCGAACTAATAAAATCA 3361 Query 970 CATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATCGGGGGTGGA 1029 || || || || ||| ||||| || || |||| || ||||| ||| |||| || || Sbjct 3362 CACTTCGGCGTCTCTTCCCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGCGGC 3421 Query 1030 TCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGTAATGCTAGTGGAACT 1089 ||||| | || |||| || | ||||| ||| |||| | || Sbjct 3422 TCAACTGCGGTAAACATTACCCCAGTAACTCAGCAATC---------TGCTTCAGATGCT 3472 Query 1090 ACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCT-CATAATCATGGCTT 1148 ||||||||| ||| | ||||| ||| | ||||||| || | || |||||||| ||||| Sbjct 3473 ACTACCCCTCAGGGTAACCTTGCAGCTTTCGGTACTG-CTAGCCTACATAATCACGGCTT 3531 Query 1149 TACTTACTCAGCTACTGAACATGGTGTCATTCTGGGATTAGTATCTGTACGTGCCGATCT 1208 | | || || ||||| | |||| | || | || ||||| ||||||||||| Sbjct 3532 CTCAAAATCTTTCACCGAACACTGCATCATCATCGGCATGGTTTCTGTCCGTGCCGATCT 3591 Query 1209 TACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGATACGATTTTTATTT 1268 ||||| || || || | | || |||| ||||| || || || || || || | Sbjct 3592 AACATATCAACAGGGCCTTAACCGAATGTTCTCGCGTTCTACGCGCTATGACTTCTACTG 3651 Query 1269 CCCAGCA-TTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAAAT-TTATGTTACA 1326 || ||| | | ||||| || |||||| | || || || || ||||| || | | | Sbjct 3652 GCCTGCACTATCTCACCTT-GGCGAACAATCTATTCTTAACAAAGAAATCTTCTCTGA-T 3709 Query 1327 GGTAGCTCTGGGGATAATGATGTATTTGGTTATCAAGAACGCTGGGCAGAATACCGATA 1385 ||| | || ||| ||||| || ||||||||||||| || |||||||| || Sbjct 3710 GGTTCAGCCACCGACGATGCCGTATTCGGCTATCAAGAACGCTACGCGGAATACCGCTA 3768 Score = 131 bits (144), Expect = 5e-27 Identities = 351/530 (66%), Gaps = 19/530 (4%) Strand=Plus/Plus Query 93 CAAAACTACTTTCGATGCCGGTTTCTTAGTACCTGTATATGTAGATGAAATGTTGCCAGG 152 |||||||||||| || ||||| || | ||| | | ||| || ||| | || || Sbjct 2515 CAAAACTACTTTTGACGCCGGAAAACTAATCCCTATCTTTGTCGACGAAGCACTTCCCGG 2574 Query 153 CGATACTTTCCGCCTTAATATGACGGCATTTGCCCGTTTAGCAACTCCTCTTTATCCAAT 212 ||| |||||| || || ||||| || ||||| ||| | || || ||| || | || || Sbjct 2575 CGACACTTTCAAACTCAACATGACTGCCTTTGCACGTCTTGCCACACCTATTAACCCCAT 2634 Query 213 TATGGATAATATGCACTTAGATTCATTCTTTTTCTTTGTCCCAAATAGATTAATTTGGAA 272 |||||||| ||| || | || | || |||| ||| |||| | || | ||| | Sbjct 2635 CATGGATAACATGTACATGGACACGCATTTCTTCTCTGTACCAATGCGTCTACTATGGGA 2694 Query 273 CAATTGGCAAAAATTTATGGGTCAACAAG-CGAACCCTGATAGTTCGATTTCTTTTGTTG 331 ||| ||||||||||| | ||| ||||| ||| ||| | | ||| ||| | | | Sbjct 2695 CAACTGGCAAAAATTCAATGGTGAACAAATCGACCCCGGCGA-TTCCATTGACTATCTAA 2753 Query 332 TACCCCAACAAGTAT-CACCTGCTGGTGGATACGCTATTGGATCATTACAAGATTACATG 390 |||| | || | | |||||||||| || ||||| || || | |||||| | Sbjct 2754 TACCT-ACCACTTCTGCACCTGCTGGCGGTTACGCCGAAGGTTCTATGTCCGATTACTTC 2812 Query 391 GGTTTACCTACTGTTGGTCAAGTAGGTGCTGGTAATACAGTAAGCCATTGTGCTTTTTGG 450 || | |||||| |||| | |||| | || || | |||| | ||| Sbjct 2813 GGCATCCCTACTA------AAGTGG---CTGGC----CTCGAA--CACTCTGCTATGTGG 2857 Query 451 CCACGTGCTTACAACCTTATATATAACGAGTGGTTTAGAGATGAAAATTTACAAAACTCT 510 | || || || ||||| | | ||||| ||||| |||| ||||| | ||| ||||| Sbjct 2858 CATCGAGCCTATAACCTCGTCTGGAACGAATGGTTCCGAGACGAAAACCTCCAAGACTCT 2917 Query 511 GTTACCGTTGATCTTGGTGATGGCCCTGATACTGTTACTAACTATACTTTATTACGACGT 570 |||| || || |||||||||||||| | ||| ||| | | || ||| || Sbjct 2918 CTTACTGTCTCTCGCGGTGATGGCCCTGACCCATCTACCGACTTCAATCTACAACGTCGC 2977 Query 571 GGAAAACGAAAAGATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAAAGG 620 || ||||| | || ||||| || ||||| | ||||||||||||||||| Sbjct 2978 GGCAAACGCCACGACTACTTCACCTCTGCTTTACCTTGGCCTCAAAAAGG 3027 >seq3 Length=2115 Score = 129 bits (142), Expect = 2e-26 Identities = 360/550 (65%), Gaps = 17/550 (3%) Strand=Plus/Plus Query 847 TATGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATTTCAG 906 ||||| || | |||| || ||||||||||||||||| || || | ||| | || ||| Sbjct 1197 TATGCTGACCTCTCTGACGCTACTGCGGCAACAATTAACGAACTAAGACAAGCGTTCCAG 1256 Query 907 ATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTATACGC 966 | ||| ||||| ||| | || ||||||||||| ||||| |||| || | || Sbjct 1257 GTACAACGCCTTCTAGAACGTGACGCCCGTGGCGGAACTCGATATATCGAGCTAATCAAA 1316 Query 967 TCACATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATCGGGGGT 1026 || || || || || ||||||||| || || |||| || ||||| ||| |||| || Sbjct 1317 TCTCACTTCGGCGTCTCTTCTCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGC 1376 Query 1027 GGATCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGTAATGCTAGTGGA 1086 || ||||| | || |||| |||| | |||| ||| ||| || Sbjct 1377 GGCTCAACTCCGGTAAACATTACTCCGGTAACTCAACAATC---------TGCCTCTGAC 1427 Query 1087 ACTACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCTCATAATCATGGC 1146 |||| || ||| |||| ||||| | | ||||| ||| || ||| ||| Sbjct 1428 GCTACAACGCCTCAAGGCAACCTTGCAGGCTTCGGTACGGCCACCCTTCGCGGTCACGGC 1487 Query 1147 TTTACTTACTCAGCTACTGAACATGGTGTCATTCTGGGATTAGTATCTGTACGTGCCGAT 1206 ||| | | || ||| ||||| | | || | || | || || || ||||||||| Sbjct 1488 TTTTCAAAATCCTTTACCGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGAT 1547 Query 1207 CTTACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGATACGATTTTTAT 1266 || || |||||||| || | | || |||| ||||| || || || || || || Sbjct 1548 CTAACTTACCAGCAGGGCCTAAACCGAATGTTCTCGCGTTCCACGCGCTATGACTTCTAC 1607 Query 1267 TTCCCAGCA-TTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAAATTTATGTTAC 1325 | || ||| | | ||||| || |||||| |||| || ||||| ||||| | || | Sbjct 1608 TGGCCTGCACTCTCTCACCTT-GGCGAACAATCCATCCTTAATAAAGAAATCT---TTTC 1663 Query 1326 AGGTAGCTCTGGGGATAATGAT---GTATTTGGTTATCAAGAACGCTGGGCAGAATACCG 1382 | | | ||| || | ||| || || || ||||||||||| | || |||||||| Sbjct 1664 TGATGGTTCTACCAATGACGATGCCGTCTTCGGCTATCAAGAACGTTATGCGGAATACCG 1723 Query 1383 ATATTATCCT 1392 ||| | ||| Sbjct 1724 CTATAAACCT 1733 Score = 96.9 bits (106), Expect = 9e-17 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 441 TGCTTTTTGGCCACGTGCTTACAACCTTATATATAACGAGTGGTTTAGAGATGAAAATTT 500 |||| | |||| || || ||||| || | | ||||| ||||| | || |||||| | Sbjct 842 TGCTATGTGGCATCGAGCCTACAATCTCGTCTGGAACGAATGGTTCCGTGACGAAAATCT 901 Query 501 ACAAAACTCTGTTACCGTTGATCTTGGTGATGGCCCTGATACTGTTACTAACTATACTTT 560 ||| ||||| | || || || |||||||| |||||| | ||| ||| || || Sbjct 902 TCAAGACTCTCTCACTGTCTCTCGCGGTGATGGGCCTGATCCCTCTACCGACTTCACCTT 961 Query 561 ATTACGACGTGGAAAACGAAAAGATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAAAGG 620 | ||| || || ||||| | || ||||| || ||||| || ||||||||||||||||| Sbjct 962 ACAACGTCGAGGCAAACGCCACGACTACTTCACATCTGCACTACCTTGGCCTCAAAAAGG 1021 Query 621 TACTTCTGT--AACGTTACCATTAGGAACTTCTGCACCAGT 659 | | || ||| | || | || |||||||| ||||| Sbjct 1022 CGCAGCCGTTCAAC--TCCCTCTGGGCACTTCTGCTCCAGT 1060 >seq2 Length=2125 Score = 107 bits (118), Expect = 5e-20 Identities = 353/549 (64%), Gaps = 15/549 (3%) Strand=Plus/Plus Query 847 TATGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATTTCAG 906 || || || ||||||| || ||||| || ||||| || || | || ||| | || || Sbjct 1207 TACGCTGACTTATCTGATGCTACTGCTGCTACAATCAACGAACTTCGACAAGCGTTCCAA 1266 Query 907 ATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTATACGC 966 | ||| || | ||| | || ||||||||||| ||||| || | || ||||| Sbjct 1267 GTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGAACTCGATACATCGAGCTTATAAAA 1326 Query 967 TCACATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATCGGGGGT 1026 || || || || || ||||||||| || || ||||| || ||||| ||| |||| || Sbjct 1327 TCTCACTTCGGCGTCTCTTCTCCTGACGCACGATTACAACGCCCCGAATACCTCGGCGGC 1386 Query 1027 GGATCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGTAATGCTAGTGGA 1086 || || | | | || |||| ||| | | || ||| ||| || Sbjct 1387 GGCTCTAGCCCGGTAAACATTACCCCGGTAACACAACAATC---------TGCCTCTGAC 1437 Query 1087 ACTACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCTCATAATCATGGC 1146 ||||||| ||| |||| ||||| | | ||||| ||| || ||| ||| Sbjct 1438 GCTACTACGCCTCAAGGCAACCTTGCAGGCTTCGGTACAGCCACCCTTCGCGGTCACGGC 1497 Query 1147 TTTACTTACTCAGCTACTGAACATGGTGTCATTCTGGGATTAGTATCTGTACGTGCCGAT 1206 || | | || || ||||| | | || | || | || || || ||||||||| Sbjct 1498 TTCTCAAAATCCTTCACCGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGAT 1557 Query 1207 CTTACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGATACGATTTTTAT 1266 || || || ||||| || | | || |||| ||||||||||| || || || || Sbjct 1558 CTAACCTATCAGCAGGGCCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTTCTAC 1617 Query 1267 TTCCCAGCATTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAAATTTATGTTACA 1326 | || ||| | | | | || |||||| ||||||| ||||| ||||| | || | Sbjct 1618 TGGCCTGCACTCTCTCACCTGGGCGAACAATCCATACTTAATAAAGAAATCT---TTTCT 1674 Query 1327 GGTAGCTCTG---GGGATAATGATGTATTTGGTTATCAAGAACGCTGGGCAGAATACCGA 1383 | | | |||| || ||| || || || ||||||||||||| || |||||||| Sbjct 1675 GATGGTTCTGCCACTGACGATGCCGTCTTCGGCTATCAAGAACGCTATGCGGAATACCGC 1734 Query 1384 TATTATCCT 1392 ||| | ||| Sbjct 1735 TATAAACCT 1743 Score = 98.7 bits (108), Expect = 3e-17 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 448 TGGCCACGTGCTTACAACCTTATATATAACGAGTGGTTTAGAGATGAAAATTTACAAAAC 507 |||| || || ||||| || | | ||||| ||||| | || ||||| |||||| || Sbjct 850 TGGCATCGAGCCTACAATCTCGTCTGGAACGAATGGTTCCGTGACGAAAACTTACAAGAC 909 Query 508 TCTGTTACCGTTGATCTTGGTGATGGCCCTGATACTGTTACTAACTATACTTTATTACGA 567 ||| | || || | ||||| || |||||| | || ||| ||| | ||| Sbjct 910 TCTTTAACAGTCTCACGCGGTGACGGTCCTGATCCGTCAACCGACTTCACTCTTCAACGT 969 Query 568 CGTGGAAAACGAAAAGATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAAAGGTACTTCT 627 || || ||||| | || ||||| |||||||| | ||||||||||||||||| || | Sbjct 970 CGAGGCAAACGCCACGACTACTTCACTTCTGCATTACCTTGGCCTCAAAAAGGCGCTGCC 1029 Query 628 GTAACGTTACCATTAGGAACTTCTGCACC 656 ||| || || ||||| ||||||||||| Sbjct 1030 GTACAATTGCCTTTAGGCACTTCTGCACC 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13561120745770