Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_030458.1 Length=5016 Score E Sequences producing significant alignments: (Bits) Value seq3 120 1e-23 seq9 111 5e-21 seq2 111 5e-21 >seq3 Length=2115 Score = 120 bits (132), Expect = 1e-23 Identities = 225/320 (70%), Gaps = 13/320 (4%) Strand=Plus/Plus Query 3515 AAGTCGTTTGTCGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAA 3574 || || ||| ||||||| || || | ||||| | ||| || || ||||| || Sbjct 1494 AAATCCTTTACCGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACT 1553 Query 3575 TATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGGACGCGCTATGACTTCTATTGGCCT 3634 || |||||||| || || || |||| |||||| ||||||||||||||||| |||||| Sbjct 1554 TACCAGCAGGGCCTAAACCGAATGTTCTCGCGTTCCACGCGCTATGACTTCTACTGGCCT 1613 Query 3635 GCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCGACC 3694 || ||| | | ||||| ||||| || | ||||| ||||| || | | | || | | | Sbjct 1614 GCACTCTCTCACCTTGGCGAACAATCCATCCTTAATAAAGAAATCTTTTCTGA-TGGTTC 1672 Query 3695 GACGGCAAGGATGATGAGGTTTTTGGCTATCAAGAGAGGTGGAGC-GAGTATCGCTATAA 3753 || ||| || |||| || || ||||||||||| | || || || || |||||||| Sbjct 1673 TAC--CAATGACGATGCCGTCTTCGGCTATCAAGA-ACGTTATGCGGAATACCGCTATAA 1729 Query 3754 GCCCTCTATGATTACTGGCAAGC-TGCGTTCTAAT--GACC-CTCAGTCTCTCGATGTTT 3809 || ||||| || ||| || | | || || ||| |||| || || ||||||| || Sbjct 1730 ACCTTCTATCATCACT-TCACTCTTCCGGTCCAATGCGACCGCT---TCACTCGATGCTT 1785 Query 3810 GGCATTTGGCTCAAAATTTC 3829 |||| || | ||| | ||| Sbjct 1786 GGCACCTGTCCCAAGACTTC 1805 >seq9 Length=4117 Score = 111 bits (122), Expect = 5e-21 Identities = 300/453 (66%), Gaps = 21/453 (5%) Strand=Plus/Plus Query 3554 TCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGGACG 3613 ||||| || ||||| || |||||| ||||| ||||| || |||| |||||| ||| Sbjct 3575 TCTGTCCGTGCCGATCTAACATATCAACAGGGCCTTAACCGAATGTTCTCGCGTTCTACG 3634 Query 3614 CGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAA 3673 |||||||||||||| |||||||| || | | ||||| ||||| | | ||||||||| Sbjct 3635 CGCTATGACTTCTACTGGCCTGCACTATCTCACCTTGGCGAACAATCTATTCTTAACAAA 3694 Query 3674 GAGATTTATGCCGATTCGACCGACGGCAAGGATGATGAGGTTTTTGGCTATCAAGAGAGG 3733 || || | | ||| | | || || |||| || || ||||||||||| | Sbjct 3695 GAAATCTTCTCTGATGGTTC---AGCCACCGACGATGCCGTATTCGGCTATCAAGAACGC 3751 Query 3734 TGGAGCGAGTATCGCTATAAGCCCTCTATGATTACTGGCAAGCTGCGTTCTAATGACCCT 3793 | || || ||||| || || |||| ||||| | | | || ||||||| | Sbjct 3752 TACGCGGAATACCGCTACAAACCTTCTACCATTACCTCCCTGTTTCGCTCTAATG--CAA 3809 Query 3794 CAG--TCTCTCGATGTTTGGCATTTGGCTCAAAATTTCATCGAGCGTC-CTACCCTCTCG 3850 ||| || ||||||| |||||| || | ||| | ||| || | ||||| | | Sbjct 3810 CAGGCTCACTCGATGCTTGGCACCTGTCCCAAGACTTC-----GCAACTCTACCAGCACT 3864 Query 3851 T----CTGATTTCATTAAAGACGCTCCGCCTATTAAGCGTGTTTTGGCCGTGCAGGATGA 3906 | || |||||| ||||| || || || | | | | ||||| | || Sbjct 3865 TAACCCTTCATTCATTGAAGACAACCCACCAATCGACAGAATAGTCGCCGTTCCTTCGGA 3924 Query 3907 ACCCGAGTTCGTTTGCGATTTC--CATTTCATTTGTAAATGTGCTCGTCCAATGCCCGTG 3964 ||| || || | | ||||||| ||| ||||| ||||| || |||||||| ||| Sbjct 3925 ACCTGACTTTATCTTCGATTTCCACATGTCATT--ACGATGTGTCCGCCCAATGCCTGTG 3982 Query 3965 TATTCAGTCCCTGGTTTGATTGACCATCACTAA 3997 || || || || || || ||||||||| |||| Sbjct 3983 TACTCTGTACCCGGCTTAATTGACCATTTCTAA 4015 >seq2 Length=2125 Score = 111 bits (122), Expect = 5e-21 Identities = 318/482 (66%), Gaps = 23/482 (5%) Strand=Plus/Plus Query 3526 CGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGG 3585 ||||||| || || | ||||| | ||| || || ||||| || ||||||||||| Sbjct 1515 CGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACCTATCAGCAGGG 1574 Query 3586 TCTTAATCGGATGTGGTCGCGTAGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAA 3645 ||||| || |||| |||||| || |||||||||||||| |||||||| ||| | | Sbjct 1575 CCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTTCTACTGGCCTGCACTCTCTCA 1634 Query 3646 TCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCGACCGACGGCAAGGA 3705 || || ||||| || | ||||| ||||| || | | | ||| | | || || Sbjct 1635 CCTGGGCGAACAATCCATACTTAATAAAGAAATCTTTTCTGATGGTTC---TGCCACTGA 1691 Query 3706 TGATGAGGTTTTTGGCTATCAAGAGAGGTGGAGCGAGTATCGCTATAAGCCCTCTATGAT 3765 |||| || || ||||||||||| | | || || |||||||| || |||| || Sbjct 1692 CGATGCCGTCTTCGGCTATCAAGAACGCTATGCGGAATACCGCTATAAACCTTCTACTAT 1751 Query 3766 TACTGGCAAGCTGCGTTCTAAT--GACC-CTCAGTCTCTCGATGTTTGGCATTTGGCTCA 3822 ||| | || || ||| |||| || || ||||||| |||||| || | || Sbjct 1752 TACCTCTCTCTTCCGGTCCAATGCGACCGCT---TCACTCGATGCTTGGCACCTGTCCCA 1808 Query 3823 AAATTTCATCGAGCGTC-CTACCCTCTCGT----CTGATTTCATTAAAGACGCTCCGCCT 3877 | | ||| || | ||||| | | | || |||||| ||||| ||| || Sbjct 1809 AGACTTC-----GCAACTCTACCAGCACTTAATCCTTCATTCATTGAAGACAATCCACCA 1863 Query 3878 ATTAAGCGTGTTTTGGCCGTGCAGGATGAACCCGAGTTCGTTTGCGATT--TCCATTTCA 3935 || | | || | ||||| | |||||||| || | | ||||| ||| ||| Sbjct 1864 ATCGACAGAATTGTCGCCGTTCCTTCGGAACCCGACTTTATCTTCGATTCACACATGTCA 1923 Query 3936 TTTGTAAATGTGCTCGTCCAATGCCCGTGTATTCAGTCCCTGGTTTGATTGACCATCACT 3995 || ||||| ||||| ||||| ||||| || || || || || ||||||||| || Sbjct 1924 TT--ACGATGTGTACGTCCTATGCCTGTGTACTCCGTACCCGGCTTAATTGACCATTTCT 1981 Query 3996 AA 3997 || Sbjct 1982 AA 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15938636723615