Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_030472.1 Length=4851 Score E Sequences producing significant alignments: (Bits) Value seq2 102 3e-18 >seq2 Length=2125 Score = 102 bits (112), Expect = 3e-18 Identities = 154/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 3434 CTCTGTTCGTGCAGACCTAGAATATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGAAC 3493 ||| || ||||| || ||| ||||||||||| ||||| || |||| |||||| ||| Sbjct 1542 CTCCGTCCGTGCCGATCTAACCTATCAGCAGGGCCTTAACCGCATGTTCTCGCGTTCAAC 1601 Query 3494 GCGTTATGATTTCTATTGGCCCGCTCTTGCTAATCTTGGTGAACAGGCTGTGCTTAATAA 3553 || ||||| ||||| ||||| || || || | || || ||||| | | |||||||| Sbjct 1602 ACGCTATGACTTCTACTGGCCTGCACTCTCTCACCTGGGCGAACAATCCATACTTAATAA 1661 Query 3554 GGAACTCTATGCCGA---TTCTGCCGATGGGAAGGACGATGACGTTTTTGGTTATCAAGA 3610 ||| ||| | | || ||||||| | ||||||| ||| || || |||||||| Sbjct 1662 AGAAATCTTTTCTGATGGTTCTGCC------ACTGACGATGCCGTCTTCGGCTATCAAGA 1715 Query 3611 GAGGTGGAGCGAGTATCGCTATAAGCCCTCTATGATTAC 3649 | | || || |||||||| || |||| ||||| Sbjct 1716 ACGCTATGCGGAATACCGCTATAAACCTTCTACTATTAC 1754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15410655382640