Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_026259.1 Length=2077 Score E Sequences producing significant alignments: (Bits) Value seq338 179 5e-42 seq822 77.0 4e-11 >seq338 Length=7727 Score = 179 bits (198), Expect = 5e-42 Identities = 210/284 (74%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 549 GACCCGGAATTACTGTGGACTGGATGCACGGACTGCCAGGAGTGGGCAAATCTAGAAGAG 608 ||||||||||| |||| || |||| ||||| || ||||| || || || ||| | Sbjct 604 GACCCGGAATTTCTGTTGAATGGACCTACGGAGCTCCCGGAGTTGGAAAGTCAAGACTGG 663 Query 609 CTCATGAGCGACTTCCAGACGCCTATATAAAAGACCCAAGAACAAAATGGTGGAACGGAT 668 ||||||| ||| | |||||||| ||| | || || ||| | | ||||| ||||| || | Sbjct 664 CTCATGAACGAATGCCAGACGCTTATGTGAAGGATCCACGCAACAAATGTTGGAATGGCT 723 Query 669 ACTTCGGCGAGAAGGAGGTGATCATCGACGACTTCGGACCGCAAGGAATAGATATAAACC 728 || | ||||| | | || || || || |||||||| || ||||||| ||||| |||| Sbjct 724 ACATGCTCGAGACGCAAGTTATAATTGAGGACTTCGGTCCAAAAGGAATTGATATCAACC 783 Query 729 ATCTACTAAGATGGTTCGATAGATATAAATGCACCGTAGAGTATAAGGGAGGAATGATGC 788 | ||||||| ||||| ||| |||| || |||| ||| ||||| |||| ||||||||||| Sbjct 784 ACTTACTAAGGTGGTTTGATCGATACAAGTGCAACGTCGAGTACAAGGCAGGAATGATGC 843 Query 789 CACTGATGGCAGAAACCTTCATAGTAACAAGCAATTATCACCCG 832 | || |||||| | || || |||||||| | ||| ||| Sbjct 844 CTCTATACGCAGAACAGTGGATCGTGACAAGCAACTTTCATCCG 887 Score = 78.8 bits (86), Expect = 1e-11 Identities = 189/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 548 AGACCCGGAATTACTGTGGACTGGATGCACGGACTGCCAGGAGTGGGCAAATCTAGAAGA 607 ||||||||||| |||| | ||| || |||| || ||| || || ||| ||||| Sbjct 2910 AGACCCGGAATATCTGTCAAGTGGCTGTGGGGACCTCCCGGAACTGGGAAGTCTCGAAGA 2969 Query 608 GCTCATG-AGCGACTTCCAGACGCCTATATAAAAGACCCAAGAACAAAATGGTGGAACGG 666 ||||||| || | ||||| || || || || ||| ||||||||||||||||| Sbjct 2970 GCTCATGCAGAG-CTTCCCACAGCTTACATCAAGTGTTCAACCACAAAATGGTGGAACGG 3028 Query 667 ATACTTCGGCGAGAA--GGAGGTGATCATCGACGACTTCGGACCGCAAGGAATAGATATA 724 |||| ||| ||| | | |||||||| ||||||| | || | ||||| | | | Sbjct 3029 ATAC--CGGTTGGAACCGCATGTGATCATTGACGACTAGGCGCCAAACGGAATCGGTCTG 3086 Query 725 AACCATCTACTAAGATGGTTCGATAGATATAAATGCACCGTAGA-GTATAAGGGAGGAAT 783 || || | | | ||| |||| | || || |||| ||||| || |||||| | || Sbjct 3087 AATCACTTGTTGAAGTGGATCGACCGCTACAAGTGCAATGTAGAGGTCAAAGGGA-GTAT 3145 Query 784 GATGCCACTGATGGCAGAAACCTTCATAGTAACAAGCAA 822 | | | ||| || || | ||||| || |||||||| Sbjct 3146 GGTTGCTCTGTACGCTGAGAGGTTCATCGTCACAAGCAA 3184 >seq822 Length=421 Score = 77.0 bits (84), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 650 ACAAAATGGTGGAACGGATACTTCGGCGAGAAGGAGGTGATCATCGACGACTTCGGACCG 709 || || ||||||||||||||| | |||||| ||||| ||||| ||||| ||| || Sbjct 10 ACCAAGTGGTGGAACGGATACCGCCTCGAGAAAGAGGTCATCATTGACGATCTCGCGCCA 69 Query 710 CAAGGAATAGATATAAACCATCTACTAAGATGGTTCGATAGATATAAATGCACCGTAG-A 768 | || || | ||| || || |||| | ||||||||| | |||||||| | ||| | | Sbjct 70 AATGGGATTGGTATCAATCACTTACTGCGCTGGTTCGATCGTTATAAATGTAACGTCGAA 129 Query 769 GTATAAGGGAGGAATGATGCCACTGATGGCAGAAACCTTCATAGTAACAAGCAATT 824 || |||| | | ||| | | || || || | ||||| || ||||| |||| Sbjct 130 GTGAAAGGCA-GCATGGTAGCGCTTCATGCTGACAAGTTCATCGTTACAAGTAATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6537390641532