Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_002020.1 Length=890 Score E Sequences producing significant alignments: (Bits) Value seq5289 385 3e-104 seq5558 172 3e-40 >seq5289 Length=259 Score = 385 bits (426), Expect = 3e-104 Identities = 241/258 (93%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 412 TACTGAAAGCGAACTTCAGTGTGATTTTTGACCGGCTGGAGACTCTAATATTGCTAAGGG 471 ||||||||||||||||||||||||| || || || |||||||| |||||| | || |||| Sbjct 259 TACTGAAAGCGAACTTCAGTGTGATCTTCGATCGACTGGAGACACTAATACTACTCAGGG 200 Query 472 CTTTCACCGAAGAGGGAGCAATTGTTGGCGAAA-TTTCACCATTGCCTTCTCTTCCAGGA 530 ||||||| ||||| ||||||||||| || |||| |||||||||||||||||||||||||| Sbjct 199 CTTTCACTGAAGAAGGAGCAATTGTCGGTGAAAATTTCACCATTGCCTTCTCTTCCAGGA 140 Query 531 CATACTGCTGAGGATGTCAAAAATGCAGTTGGAGTCCTCATCGGAGGACTTGAATGGAAT 590 ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 139 CATACTGATGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGAGGACTTGAATGGAAT 80 Query 591 GATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAG 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 GATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAG 20 Query 651 AATGGGAGACCTCCACTC 668 ||||||||||||||||| Sbjct 19 GATGGGAGACCTCCACTC 2 >seq5558 Length=218 Score = 172 bits (190), Expect = 3e-40 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 408 ATCATACTGAAAGCGAACTTCAGTGTGATTTTTGACCGGCTGGAGACTCTAATATTGCTA 467 || ||||| || ||||||||| ||| | ||||| | ||||| || || | | || Sbjct 10 ATAATACTCAAGGCGAACTTCTCTGTCTTATTTGATCAACTGGAAACATTAGTCTCACTG 69 Query 468 AGGGCTTTCACCGAAGAGGGAGCAATTGTTGGCGAAATTTCACCATTGCCTTCTCTTCCA 527 ||||||||||| || || || || ||||| | ||||| || || | ||||| | ||| Sbjct 70 AGGGCTTTCACAGACGATGGCGCCATTGTAGCTGAAATATCTCCCATTCCTTCCATGCCA 129 Query 528 GGACATACTGCTGAGGATGTCAAAAATGCAGTTGGAGTCCTCATCGGAGGACTTGAATGG 587 |||||| || | |||||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct 130 GGACATTCTACAGAGGATGTCAAAAATGCAATTGGAATCCTCATCGGTGGACTTGAATGG 189 Query 588 AATGATAACACAGTTCGAGTCTCTGAAA 615 ||||||||| || |||||| ||||||| Sbjct 190 AATGATAACTCAATTCGAGCGTCTGAAA 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2742238317523