Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_004906.1 Length=890 Score E Sequences producing significant alignments: (Bits) Value seq5289 333 1e-88 seq5558 141 5e-31 >seq5289 Length=259 Score = 333 bits (368), Expect = 1e-88 Identities = 230/259 (89%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 412 TATTGAAAGCAAACTTTAGTGTGATTTTTAATCGACTTGAAGCTCTGATACTACTTAGAG 471 || ||||||| ||||| |||||||| || ||||||| || | || |||||||| || | Sbjct 259 TACTGAAAGCGAACTTCAGTGTGATCTTCGATCGACTGGAGACACTAATACTACTCAGGG 200 Query 472 CGTTTACAGATGAAGGAGCAATAGTGGGCGAAA-TCTCACCATTACCTTCCCTTCCAGGA 530 | || || || ||||||||||| || || |||| | |||||||| ||||| ||||||||| Sbjct 199 CTTTCACTGAAGAAGGAGCAATTGTCGGTGAAAATTTCACCATTGCCTTCTCTTCCAGGA 140 Query 531 CATACTGACGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGAGGACTTGAATGGAAT 590 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 CATACTGATGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGAGGACTTGAATGGAAT 80 Query 591 GATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCACTTGGAGAAGCAGTGATGAG 650 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 79 GATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAG 20 Query 651 AATGGGAGATCTCCACTCC 669 |||||||| ||||||||| Sbjct 19 GATGGGAGACCTCCACTCC 1 >seq5558 Length=218 Score = 141 bits (156), Expect = 5e-31 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 408 ATCATATTGAAAGCAAACTTTAGTGTGATTTTTAATCGACTTGAAGCTCTGATACTACTT 467 || ||| | || || ||||| ||| | ||| ||| ||| ||| | | | ||| Sbjct 10 ATAATACTCAAGGCGAACTTCTCTGTCTTATTTGATCAACTGGAAACATTAGTCTCACTG 69 Query 468 AGAGCGTTTACAGATGAAGGAGCAATAGTGGGCGAAATCTCACCATTACCTTCCCTTCCA 527 || || || ||||| || || || || || | ||||| || || | |||||| | ||| Sbjct 70 AGGGCTTTCACAGACGATGGCGCCATTGTAGCTGAAATATCTCCCATTCCTTCCATGCCA 129 Query 528 GGACATACTGACGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGAGGACTTGAATGG 587 |||||| || ||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 130 GGACATTCTACAGAGGATGTCAAAAATGCAATTGGAATCCTCATCGGTGGACTTGAATGG 189 Query 588 AATGATAACACAGTTCGAGTCTCTGAAA 615 ||||||||| || |||||| ||||||| Sbjct 190 AATGATAACTCAATTCGAGCGTCTGAAA 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2742238317523