Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030922.1 Length=6673 Score E Sequences producing significant alignments: (Bits) Value seq383 288 4e-74 >seq383 Length=340782 Score = 288 bits (318), Expect = 4e-74 Identities = 362/492 (74%), Gaps = 4/492 (1%) Strand=Plus/Minus Query 4870 GAAACCTTCCGCTATTGGTGGTGATCAATTACTTCTACAAGGTGGACATCACCCTGACCT 4929 ||||| ||||| | | || || || || | || | || || || || || || || | Sbjct 129372 GAAACTTTCCGTT-TGGGCGGGGACCAGCTCCTGTTGCAGGGCGGCCACCATCCGGATTT 129314 Query 4930 TGGATTG-AGTTTCTACACCAACCTTTTCAAACAACTAAAGGAACTTTACCCAACCCTTA 4988 || || ||||| || |||| | || ||||| |||| |||||||| || || | Sbjct 129313 GGGTCTGGAGTTT-TATACCACTTTGTTTAAACAGTTAAAAGAACTTTATCCCGATCTGA 129255 Query 4989 GGCTTCTCTCCTTAGGGCCACCAGAAATTGCGCACGTAGCAAAACTGGAAGGCATGAGCC 5048 |||| | || || ||||| |||||||| || || |||||||||||||| || || Sbjct 129254 AACTTCATGCTTTGGGTCCACCCGAAATTGCCCATGTGGCAAAACTGGAAGGATTGTCCC 129195 Query 5049 ACCTTGAAGTCTGGACGGCCATTCAAGAAGCTGGATTGGATTCCCTGCCGGGGGCTGGTG 5108 | ||||| | |||||||| ||| || || |||||||| |||| || ||||||| Sbjct 129194 ATACAGAAGTTTTAACGGCCATGAAAGCTGCAGGTATGGATTCCTTGCCTGGTGCTGGTG 129135 Query 5109 CAGAAATATTGAACGACCGTGTCCGTATATTGATCTCTATGGGTAAATGTGGTGGTCAAG 5168 |||| || || || ||||| ||| | | | || || | || ||||||||||| ||| Sbjct 129134 CAGAGATTTTAAATGACCGGGTCAGAAGGCTCATTTCCAAAGGGAAATGTGGTGGAAAAG 129075 Query 5169 AATGGTTGGATGTGATGCGTGCTGCCCACAAAATCAATCTTCCAACTTCGGCAACCATGA 5228 ||||| |||||||||||||||| |||||| | | | | | |||||||||||||||| Sbjct 129074 AATGGCTGGATGTGATGCGTGCCGCCCACCAGCTGGACATCACCACTTCGGCAACCATGA 129015 Query 5229 TGTTTGGACATATGGGAAACAATCGAAGAACGTTTCGAGCACTTGGTATGGCTTCGCGAA 5288 ||||||||||| | |||||| || ||||||||||| || ||| |||| ||| | | || Sbjct 129014 TGTTTGGACATGT-GGAAACGATTGAAGAACGTTTTGAACACCTGGTCTGGATCAGAGAG 128956 Query 5289 GTACAAAGCGAAAAACCAGCCGATGCTTATGGATTCATCGCCTTTATCCCTTGGCCTTTC 5348 |||||||||||||| || || ||||| ||||||| | |||||||| || ||||||||| Sbjct 128955 GTACAAAGCGAAAAGCCTGCAGATGCAAATGGATTTTTGGCCTTTATTCCATGGCCTTTC 128896 Query 5349 CAAGAGGATGGT 5360 || || || ||| Sbjct 128895 CAGGATGACGGT 128884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21235053757340