Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_004052.1 Length=2599 Score E Sequences producing significant alignments: (Bits) Value seq75 419 4e-114 seq74 172 9e-40 >seq75 Length=1460 Score = 419 bits (464), Expect = 4e-114 Identities = 678/970 (70%), Gaps = 37/970 (4%) Strand=Plus/Plus Query 881 TAGGTAAATTATCAATTGTGCATGATCCTGAATTAAAAGAAAGAGTAATTGCTATGGTTG 940 |||||||| | ||||| || ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 130 TAGGTAAACTTTCAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAG 189 Query 941 ATTATACCACACAATTTGCCCTTCGTCCTATACATAATATTTTACTTA-ATAATTTAAGC 999 | |||||||| |||||| | ||||||||||| ||| || | |||| || || ||| Sbjct 190 ACTATACCACTCAATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAG- 248 Query 1000 AAACTACCATGTGATAGAACTTTTACCCAGGATCCATTTCATAAATGA---AATGATGAT 1056 || |||||||||||||||| ||||| || ||||| |||||| ||| || ||||| Sbjct 249 AAGTTACCATGTGATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGAT 308 Query 1057 CACAAAGAAAGATACCACTCACTTGACTTATCAGCTGCAACAGATAGATTTCCAATATTC 1116 | || | | |||||||| || | ||||| ||||||||||| || Sbjct 309 GAGAAT------TTTTATTCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAA 362 Query 1117 TTACAACAAAAACTTATATCATTAATATTTAATGATTATGAGTTTGGTAAAAATTGGAGA 1176 |||||| |||| || || | | || | |||||| |||||||||| | ||||| | Sbjct 363 TTACAAGAAAAGCTCTTAGCCATTATTTATAATGACTATGAGTTTGCTCGTAATTGACGT 422 Query 1177 AATCTATTAGTAGATCGTAACTA------TGATTACCAAGGAATATCATATAGATATTCA 1230 | || | ||||||| ||| ||||| | || |||||| | |||||| Sbjct 423 AGCCTTCTTATAGATCGCCCCTACTGGTTTGATT-CAAAAGAATATTAC-----TATTCA 476 Query 1231 GTTGGACAACCAATGGGAGCGTATACTAGTTGAGCTGCCTTTACCTTGACACATCATCTT 1290 ||||| |||||||||||||| ||||| ||||| ||||| || || ||| | || |||||| Sbjct 477 GTTGGTCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTT 536 Query 1291 GTAGTTCATTGAGCTGCTGAATTAGCAGGCTTAAAGAATTTTAAGGATTATATAATATTA 1350 ||| || ||||| || || || || ||| | |||||||| ||||||||||| ||| Sbjct 537 GTAATTGCCTGAGCCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTA 596 Query 1351 GGTGATGATATTGTAATTAAAAACAATAAAGTTGCTCAAATATATATAAATCTTATGACA 1410 ||||| ||| |||| || ||| |||||||||||||||||| ||||||| | | |||||| Sbjct 597 GGTGACGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACA 656 Query 1411 AAATGAGGTGTTGATATATCTTTATCAAAAACACATGTATCTTATGATACTTATGAATTT 1470 | |||||| ||||| || ||| | |||| |||||||| | | || ||||||||| Sbjct 657 AGATGAGGAGTTGAGATCTCTCCAACAAAGACACATGTTAGTAAAACAACATATGAATTT 716 Query 1471 GCTAAAAGATGAATCAAAAATGGTAAAGAGATAAGTGGAATATCTTTAAAAGGAATCTTA 1530 || || ||||||||| |||| | ||||| || ||| ||||| ||| |||||| | Sbjct 717 GCGAAGAGATGAATCCAAAACAATCGTGAGATTAGCGGACTATCTCTAAGAGGAATTCTT 776 Query 1531 ACTAATATTAGACATATTCATGTTGTATATANNNNNNNNNNNNNNNNNNNNNNAAGAATT 1590 ||||| | |||||||||||||||||||| |||| || Sbjct 777 GTAAATATGAAACATATTCATGTTGTATATATGAATATATTCTCATATCTACAAAGAGTT 836 Query 1591 CCTTCTCTAAATGT--AGATATTTTAACTTGTGTAGGTAAATTATA---TGGTTATCTTT 1645 || ||| || |||| | |||||| | || || || || |||| ||||| | Sbjct 837 CCATCTTTAGATGTGAACATATTTAATATTATGGTGG--AACTATACACTGGTT---TAA 891 Query 1646 TAATAAGAAATCGGATTAAATCTCCGAATACTATTAAAAGATCACTATATGATTTCCACC 1705 ||| | || | || ||| | | | | ||| | ||| |||||||||| |||| Sbjct 892 AAATTGGTAACAGAATCAAAAGTTCTGCTTCAATTTCCAAGTCAATATATGATTTTCACC 951 Query 1706 ACTCAATAAGATATTCATTTGGATTATTAAATTATGAAGAAATAAGAAATTATCTTCAT- 1764 || || ||||||||||||||||| || |||| ||||| || | ||| ||| || Sbjct 952 ACAGTATTAGATATTCATTTGGATTGTTGTCTTATCAAGAACTACGTTGTTA-CTTGATA 1010 Query 1765 AACAAATTTCCATTTGATAATTATTATGCC-TGACCTGAAAGATTAGTTCATTCAAAATT 1823 ||||| | | | |||| | | |||| || ||| || ||| || || |||| | | Sbjct 1011 AACAAGATCCAAATTGAAGAGT-TTATTCCTTGATTAGAGGGATCAGCTCGTTCACGAGT 1069 Query 1824 GAATGAGATC 1833 ||| || ||| Sbjct 1070 GAACGAAATC 1079 >seq74 Length=1504 Score = 172 bits (190), Expect = 9e-40 Identities = 443/651 (68%), Gaps = 34/651 (5%) Strand=Plus/Minus Query 882 AGGTAAATTATCAATTGTGCATGATCCTGAATTAAAAGAAAGAGTAATTGCTATGGTTGA 941 ||||||| | ||||||| | ||||||||| ||||| ||||| || || ||| |||| Sbjct 695 AGGTAAACTGGCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGA 636 Query 942 TTATACCACACAATTTGCCCTTCGTCCTATACATAATATTTTACTTAATAATTTAAGCAA 1001 ||| | ||| | | ||| || || ||| || | | |||| |||| |||| || Sbjct 635 CTATCATTCTCAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAA 576 Query 1002 ACTACCATGTGATAGAACTTTTACCCAGGATCCATTTCATAAATGAAATGATGA-TCA-- 1058 | |||||||||||||||| | ||| || ||| || | | ||| | | | | ||| Sbjct 575 ATTACCATGTGATAGAACATATACTCAAAGTCCGTT-CTTTAATACAGT--TCACTCAGT 519 Query 1059 CAAAGAAAGATACCACTCACTTGACTTATCAGCTGCAACAGATAGATTTCCAATATTCTT 1118 ||| || || ||| |||| || ||||| || |||||||||||| | | || Sbjct 518 CAATGATCAATTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGT-TACTC 460 Query 1119 ACAACAAAAACTTATATCATTAATATTTA-ATGATTATGAGTTTGGTAAAAATTGGAGAA 1177 | | || || || || | | || || | | || | ||| | | | || | Sbjct 459 TCCAAAAGAAAGTA-ATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTGACAT 401 Query 1178 A-TCTATTAGTAGATCGTAACTATGATTACC---AAGGAATATCATAT-AGATATTCAGT 1232 ||||||||||||| | | | | | ||| ||||| | || || | |||| | || Sbjct 400 CGTCTATTAGTAGATAG--AGTTT--TCACCTATAAGGATCAACAGATGAAATATGCTGT 345 Query 1233 TGGACAACCAATGGGAGCGTATACTAGTTGAGCTGCCTTTACCTTGACACATCATCT-TG 1291 ||| ||||| ||||| || || |||||||||| || |||| | | || |||||||| || Sbjct 344 TGGTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTATG 285 Query 1292 TAGTTCATTGAGCTGCTGAATTAGCAGGCTT----AAAGAATTTT--AAGGATTATATAA 1345 | || || ||| ||| | |||| ||| | | || || || || | ||||| | Sbjct 284 T-GTGCACTGATGTGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATATGA 226 Query 1346 TATTAGGTGATGATATTGTAATTAAAAACAATAAAGTTGCTCAAATATATA---TAAATC 1402 | || || ||||||||||||||||| || ||||||| ||| || ||| || || Sbjct 225 TTTTGGGAGATGATATTGTAATTAACAATGATAAAGTA--TCATCTAGATACTTTACAT- 169 Query 1403 TTATGACAAAATGAGGTGTTGATATATCT-TTATCAAAAACACATGTATCTTATGATACT 1461 | |||| ||| ||||| ||||| ||| ||| ||||| | |||||||| | |||||| Sbjct 168 TAATGAGTAAACTTGGTGTAGATATTTCTGTTAACAAAA-CTCATGTATCGTTAGATACT 110 Query 1462 TATGAATTTGCTAAAAGATGAATCAAAAATGGTAAAGAGATAAGTGGAATA 1512 |||||||||||||||||||||||| ||||| ||||| | |||| || Sbjct 109 TATGAATTTGCTAAAAGATGAATCTGCGCCGGTAAGGAGATTACTGGATTA 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8207993372040