Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_004052.1
Length=2599
Score E
Sequences producing significant alignments: (Bits) Value
seq75 419 4e-114
seq74 172 9e-40
>seq75
Length=1460
Score = 419 bits (464), Expect = 4e-114
Identities = 678/970 (70%), Gaps = 37/970 (4%)
Strand=Plus/Plus
Query 881 TAGGTAAATTATCAATTGTGCATGATCCTGAATTAAAAGAAAGAGTAATTGCTATGGTTG 940
|||||||| | ||||| || ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 130 TAGGTAAACTTTCAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAG 189
Query 941 ATTATACCACACAATTTGCCCTTCGTCCTATACATAATATTTTACTTA-ATAATTTAAGC 999
| |||||||| |||||| | ||||||||||| ||| || | |||| || || |||
Sbjct 190 ACTATACCACTCAATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAG- 248
Query 1000 AAACTACCATGTGATAGAACTTTTACCCAGGATCCATTTCATAAATGA---AATGATGAT 1056
|| |||||||||||||||| ||||| || ||||| |||||| ||| || |||||
Sbjct 249 AAGTTACCATGTGATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGAT 308
Query 1057 CACAAAGAAAGATACCACTCACTTGACTTATCAGCTGCAACAGATAGATTTCCAATATTC 1116
| || | | |||||||| || | ||||| ||||||||||| ||
Sbjct 309 GAGAAT------TTTTATTCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAA 362
Query 1117 TTACAACAAAAACTTATATCATTAATATTTAATGATTATGAGTTTGGTAAAAATTGGAGA 1176
|||||| |||| || || | | || | |||||| |||||||||| | ||||| |
Sbjct 363 TTACAAGAAAAGCTCTTAGCCATTATTTATAATGACTATGAGTTTGCTCGTAATTGACGT 422
Query 1177 AATCTATTAGTAGATCGTAACTA------TGATTACCAAGGAATATCATATAGATATTCA 1230
| || | ||||||| ||| ||||| | || |||||| | ||||||
Sbjct 423 AGCCTTCTTATAGATCGCCCCTACTGGTTTGATT-CAAAAGAATATTAC-----TATTCA 476
Query 1231 GTTGGACAACCAATGGGAGCGTATACTAGTTGAGCTGCCTTTACCTTGACACATCATCTT 1290
||||| |||||||||||||| ||||| ||||| ||||| || || ||| | || ||||||
Sbjct 477 GTTGGTCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTT 536
Query 1291 GTAGTTCATTGAGCTGCTGAATTAGCAGGCTTAAAGAATTTTAAGGATTATATAATATTA 1350
||| || ||||| || || || || ||| | |||||||| ||||||||||| |||
Sbjct 537 GTAATTGCCTGAGCCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTA 596
Query 1351 GGTGATGATATTGTAATTAAAAACAATAAAGTTGCTCAAATATATATAAATCTTATGACA 1410
||||| ||| |||| || ||| |||||||||||||||||| ||||||| | | ||||||
Sbjct 597 GGTGACGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACA 656
Query 1411 AAATGAGGTGTTGATATATCTTTATCAAAAACACATGTATCTTATGATACTTATGAATTT 1470
| |||||| ||||| || ||| | |||| |||||||| | | || |||||||||
Sbjct 657 AGATGAGGAGTTGAGATCTCTCCAACAAAGACACATGTTAGTAAAACAACATATGAATTT 716
Query 1471 GCTAAAAGATGAATCAAAAATGGTAAAGAGATAAGTGGAATATCTTTAAAAGGAATCTTA 1530
|| || ||||||||| |||| | ||||| || ||| ||||| ||| |||||| |
Sbjct 717 GCGAAGAGATGAATCCAAAACAATCGTGAGATTAGCGGACTATCTCTAAGAGGAATTCTT 776
Query 1531 ACTAATATTAGACATATTCATGTTGTATATANNNNNNNNNNNNNNNNNNNNNNAAGAATT 1590
||||| | |||||||||||||||||||| |||| ||
Sbjct 777 GTAAATATGAAACATATTCATGTTGTATATATGAATATATTCTCATATCTACAAAGAGTT 836
Query 1591 CCTTCTCTAAATGT--AGATATTTTAACTTGTGTAGGTAAATTATA---TGGTTATCTTT 1645
|| ||| || |||| | |||||| | || || || || |||| ||||| |
Sbjct 837 CCATCTTTAGATGTGAACATATTTAATATTATGGTGG--AACTATACACTGGTT---TAA 891
Query 1646 TAATAAGAAATCGGATTAAATCTCCGAATACTATTAAAAGATCACTATATGATTTCCACC 1705
||| | || | || ||| | | | | ||| | ||| |||||||||| ||||
Sbjct 892 AAATTGGTAACAGAATCAAAAGTTCTGCTTCAATTTCCAAGTCAATATATGATTTTCACC 951
Query 1706 ACTCAATAAGATATTCATTTGGATTATTAAATTATGAAGAAATAAGAAATTATCTTCAT- 1764
|| || ||||||||||||||||| || |||| ||||| || | ||| ||| ||
Sbjct 952 ACAGTATTAGATATTCATTTGGATTGTTGTCTTATCAAGAACTACGTTGTTA-CTTGATA 1010
Query 1765 AACAAATTTCCATTTGATAATTATTATGCC-TGACCTGAAAGATTAGTTCATTCAAAATT 1823
||||| | | | |||| | | |||| || ||| || ||| || || |||| | |
Sbjct 1011 AACAAGATCCAAATTGAAGAGT-TTATTCCTTGATTAGAGGGATCAGCTCGTTCACGAGT 1069
Query 1824 GAATGAGATC 1833
||| || |||
Sbjct 1070 GAACGAAATC 1079
>seq74
Length=1504
Score = 172 bits (190), Expect = 9e-40
Identities = 443/651 (68%), Gaps = 34/651 (5%)
Strand=Plus/Minus
Query 882 AGGTAAATTATCAATTGTGCATGATCCTGAATTAAAAGAAAGAGTAATTGCTATGGTTGA 941
||||||| | ||||||| | ||||||||| ||||| ||||| || || ||| ||||
Sbjct 695 AGGTAAACTGGCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGA 636
Query 942 TTATACCACACAATTTGCCCTTCGTCCTATACATAATATTTTACTTAATAATTTAAGCAA 1001
||| | ||| | | ||| || || ||| || | | |||| |||| |||| ||
Sbjct 635 CTATCATTCTCAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAA 576
Query 1002 ACTACCATGTGATAGAACTTTTACCCAGGATCCATTTCATAAATGAAATGATGA-TCA-- 1058
| |||||||||||||||| | ||| || ||| || | | ||| | | | | |||
Sbjct 575 ATTACCATGTGATAGAACATATACTCAAAGTCCGTT-CTTTAATACAGT--TCACTCAGT 519
Query 1059 CAAAGAAAGATACCACTCACTTGACTTATCAGCTGCAACAGATAGATTTCCAATATTCTT 1118
||| || || ||| |||| || ||||| || |||||||||||| | | ||
Sbjct 518 CAATGATCAATTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGT-TACTC 460
Query 1119 ACAACAAAAACTTATATCATTAATATTTA-ATGATTATGAGTTTGGTAAAAATTGGAGAA 1177
| | || || || || | | || || | | || | ||| | | | || |
Sbjct 459 TCCAAAAGAAAGTA-ATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTGACAT 401
Query 1178 A-TCTATTAGTAGATCGTAACTATGATTACC---AAGGAATATCATAT-AGATATTCAGT 1232
||||||||||||| | | | | | ||| ||||| | || || | |||| | ||
Sbjct 400 CGTCTATTAGTAGATAG--AGTTT--TCACCTATAAGGATCAACAGATGAAATATGCTGT 345
Query 1233 TGGACAACCAATGGGAGCGTATACTAGTTGAGCTGCCTTTACCTTGACACATCATCT-TG 1291
||| ||||| ||||| || || |||||||||| || |||| | | || |||||||| ||
Sbjct 344 TGGTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTATG 285
Query 1292 TAGTTCATTGAGCTGCTGAATTAGCAGGCTT----AAAGAATTTT--AAGGATTATATAA 1345
| || || ||| ||| | |||| ||| | | || || || || | ||||| |
Sbjct 284 T-GTGCACTGATGTGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATATGA 226
Query 1346 TATTAGGTGATGATATTGTAATTAAAAACAATAAAGTTGCTCAAATATATA---TAAATC 1402
| || || ||||||||||||||||| || ||||||| ||| || ||| || ||
Sbjct 225 TTTTGGGAGATGATATTGTAATTAACAATGATAAAGTA--TCATCTAGATACTTTACAT- 169
Query 1403 TTATGACAAAATGAGGTGTTGATATATCT-TTATCAAAAACACATGTATCTTATGATACT 1461
| |||| ||| ||||| ||||| ||| ||| ||||| | |||||||| | ||||||
Sbjct 168 TAATGAGTAAACTTGGTGTAGATATTTCTGTTAACAAAA-CTCATGTATCGTTAGATACT 110
Query 1462 TATGAATTTGCTAAAAGATGAATCAAAAATGGTAAAGAGATAAGTGGAATA 1512
|||||||||||||||||||||||| ||||| ||||| | |||| ||
Sbjct 109 TATGAATTTGCTAAAAGATGAATCTGCGCCGGTAAGGAGATTACTGGATTA 59
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8207993372040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |