Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_006264.1 Length=2587 Score E Sequences producing significant alignments: (Bits) Value seq75 147 4e-32 seq74 134 2e-28 >seq75 Length=1460 Score = 147 bits (162), Expect = 4e-32 Identities = 399/607 (66%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 971 TCATTAATTTATGACCCAGAATGTAAAGTTAGGATTGTAGCTATGTTAGATTATACAACA 1030 ||| || || |||| || || | |||| ||| | | || ||| |||| ||||| || Sbjct 141 TCAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAGACTATACCACT 200 Query 1031 CAGCTATTTCTCCGACCTATACATAATGACTTGTTTAAACTTCTTAAGAAGTTACCACAA 1090 || | ||| || ||||| ||| || | | ||| | | | |||||||||||| Sbjct 201 CAATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAGAAGTTACCATGT 260 Query 1091 GATAGGACTTTTACCCAAAATCCATTAAATGATTGAGAAAATAATGAACACTCATTTTGA 1150 ||||| || ||||| ||| |||| || || |||| || ||||| | |||| Sbjct 261 GATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGATGAGAATTTTTAT 320 Query 1151 TCAATCGACCTTACCGCTGCAACTGATAGATTTCCAATTAGTTTACAACGTCGGTTATTA 1210 ||| | || | | | ||||||||||||||||| || | |||||| | | ||| Sbjct 321 TCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAATTACAAGAAAAGCTCTTA 380 Query 1211 -CtatatatatataGTGATCCCGAAATTGCAAATTCTTGACAAAATCTATTAGTACATAG 1269 | || ||| |||| ||| || |||| | ||||| | || | || || Sbjct 381 GCCAT-TATTTATAATGACTATGAGTTTGCTCGTAATTGACGTAGCCTTCTTATAGAT-- 437 Query 1270 AGAATACGCTCGTAATGGGTTGAATCCAATTAAA-----TATTCAGTTGGACAACCTATG 1324 ||| | || ||| |||| || || || ||||||||||| ||||| ||| Sbjct 438 ------CGCCCCTACTGGTTTGATTCAAAAGAATATTACTATTCAGTTGGTCAACCAATG 491 Query 1325 GGGGCGTATTCGTCCTGACCTGCTTTCACATTATCTCATCATCTTGTCGTTCATTGATGT 1384 || || ||| | || |||| |||||||| |||| |||||||| || ||| Sbjct 492 GGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTAATTGCCTGAGCC 551 Query 1385 GCACATTTGTGTCATATCAATAAATTCAAAGATTATATAATTCTTGGTGACGATATCGTT 1444 ||| | | || | | |||| || ||||||||||||||| | ||||||||| | || Sbjct 552 GCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGGTGACGATGTTGTG 611 Query 1445 ATACATAATGATAAAGTTGCTAAAAAATATATAGAAATAATGGGAAAGTTAGGAGT--GG 1502 ||| | | ||||||||||| |||| |||||| ||||| || | |||||| | Sbjct 612 ATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAGATGAGGAGTTGAG 671 Query 1503 GTCTATCAGATAGTAAAACTCACGTATCGAAAGATACATATGAATTTGCTAAAAGATGAA 1562 ||| || | | || || || || ||| |||||||||||||| || ||||||| Sbjct 672 ATCTCTCCAACA--AAGACACATGTTAGTAAAACAACATATGAATTTGCGAAGAGATGAA 729 Query 1563 TCCATAA 1569 |||| || Sbjct 730 TCCAAAA 736 >seq74 Length=1504 Score = 134 bits (148), Expect = 2e-28 Identities = 296/431 (69%), Gaps = 17/431 (4%) Strand=Plus/Minus Query 1144 ATTTTGATCAATCGACCTTACCGCTGCAACTGATAGATTTCCAATTAGTTTACAAC-GTC 1202 |||||||||||| || | | ||||| ||||||||||||||| ||| | | ||| | Sbjct 509 ATTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTACTCTCCAAAAGAA 450 Query 1203 GGTTATTACtatatatatataGTGATCCCGAAATTGCAAATTCTTGACAAAATCTATTAG 1262 || |||| | || || | || | || |||||||||| |||||||| Sbjct 449 AGTAATTAGGG-AGATGTACAACAATAAGCTTTTAGCTGATTCTTGACATCGTCTATTAG 391 Query 1263 TACATAGAGAATACGCTCGTAATGGGTTGAATCCAATTAAATATTCAGTTGGACAACCTA 1322 || |||||| | | | ||| || | || | || |||||| | ||||| ||||||| Sbjct 390 TAGATAGAGTTTTCACCTATAA--GGATCAA-CAGATGAAATATGCTGTTGGTCAACCTA 334 Query 1323 TGGGGGCGTATTCGTCCTGACCTGCTTTCA-CATTATCTCATCATCT-TGTCGTTCATTG 1380 |||| || || || ||| | || || | | ||| |||||||||| ||| || || || Sbjct 333 TGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTA-CTCATCATCTATGT-GTGCACTG 276 Query 1381 ATGTGCACATTTGT---GTCATATCAATAAA----TTCAAAGATTATATAATTCTTGGTG 1433 ||||||| | || || || |||||| |||||| | ||||| ||| | || | Sbjct 275 ATGTGCATACTTAGAAGGTTAT-TCAATAGGATCTTTCAAAAACTATATGATTTTGGGAG 217 Query 1434 ACGATATCGTTATACATAATGATAAAGTTGCTAAAAAATATATAGAAATAATGGGAAAGT 1493 | ||||| || || | ||||||||||| | | ||| | | ||||| | || Sbjct 216 ATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATTAATGAGTAAAC 157 Query 1494 TAGGAGTGGGTCTATCAGATAGTAAAACTCACGTATCGAAAGATACATATGAATTTGCTA 1553 | || || | | | || | || |||||||| |||||| |||||| ||||||||||||| Sbjct 156 TTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAATTTGCTA 97 Query 1554 AAAGATGAATC 1564 ||||||||||| Sbjct 96 AAAGATGAATC 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8169593403048