Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_006264.1
Length=2587
Score E
Sequences producing significant alignments: (Bits) Value
seq75 147 4e-32
seq74 134 2e-28
>seq75
Length=1460
Score = 147 bits (162), Expect = 4e-32
Identities = 399/607 (66%), Gaps = 19/607 (3%)
Strand=Plus/Plus
Query 971 TCATTAATTTATGACCCAGAATGTAAAGTTAGGATTGTAGCTATGTTAGATTATACAACA 1030
||| || || |||| || || | |||| ||| | | || ||| |||| ||||| ||
Sbjct 141 TCAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAGACTATACCACT 200
Query 1031 CAGCTATTTCTCCGACCTATACATAATGACTTGTTTAAACTTCTTAAGAAGTTACCACAA 1090
|| | ||| || ||||| ||| || | | ||| | | | ||||||||||||
Sbjct 201 CAATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAGAAGTTACCATGT 260
Query 1091 GATAGGACTTTTACCCAAAATCCATTAAATGATTGAGAAAATAATGAACACTCATTTTGA 1150
||||| || ||||| ||| |||| || || |||| || ||||| | ||||
Sbjct 261 GATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGATGAGAATTTTTAT 320
Query 1151 TCAATCGACCTTACCGCTGCAACTGATAGATTTCCAATTAGTTTACAACGTCGGTTATTA 1210
||| | || | | | ||||||||||||||||| || | |||||| | | |||
Sbjct 321 TCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAATTACAAGAAAAGCTCTTA 380
Query 1211 -CtatatatatataGTGATCCCGAAATTGCAAATTCTTGACAAAATCTATTAGTACATAG 1269
| || ||| |||| ||| || |||| | ||||| | || | || ||
Sbjct 381 GCCAT-TATTTATAATGACTATGAGTTTGCTCGTAATTGACGTAGCCTTCTTATAGAT-- 437
Query 1270 AGAATACGCTCGTAATGGGTTGAATCCAATTAAA-----TATTCAGTTGGACAACCTATG 1324
||| | || ||| |||| || || || ||||||||||| ||||| |||
Sbjct 438 ------CGCCCCTACTGGTTTGATTCAAAAGAATATTACTATTCAGTTGGTCAACCAATG 491
Query 1325 GGGGCGTATTCGTCCTGACCTGCTTTCACATTATCTCATCATCTTGTCGTTCATTGATGT 1384
|| || ||| | || |||| |||||||| |||| |||||||| || |||
Sbjct 492 GGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTAATTGCCTGAGCC 551
Query 1385 GCACATTTGTGTCATATCAATAAATTCAAAGATTATATAATTCTTGGTGACGATATCGTT 1444
||| | | || | | |||| || ||||||||||||||| | ||||||||| | ||
Sbjct 552 GCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGGTGACGATGTTGTG 611
Query 1445 ATACATAATGATAAAGTTGCTAAAAAATATATAGAAATAATGGGAAAGTTAGGAGT--GG 1502
||| | | ||||||||||| |||| |||||| ||||| || | |||||| |
Sbjct 612 ATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAGATGAGGAGTTGAG 671
Query 1503 GTCTATCAGATAGTAAAACTCACGTATCGAAAGATACATATGAATTTGCTAAAAGATGAA 1562
||| || | | || || || || ||| |||||||||||||| || |||||||
Sbjct 672 ATCTCTCCAACA--AAGACACATGTTAGTAAAACAACATATGAATTTGCGAAGAGATGAA 729
Query 1563 TCCATAA 1569
|||| ||
Sbjct 730 TCCAAAA 736
>seq74
Length=1504
Score = 134 bits (148), Expect = 2e-28
Identities = 296/431 (69%), Gaps = 17/431 (4%)
Strand=Plus/Minus
Query 1144 ATTTTGATCAATCGACCTTACCGCTGCAACTGATAGATTTCCAATTAGTTTACAAC-GTC 1202
|||||||||||| || | | ||||| ||||||||||||||| ||| | | ||| |
Sbjct 509 ATTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTACTCTCCAAAAGAA 450
Query 1203 GGTTATTACtatatatatataGTGATCCCGAAATTGCAAATTCTTGACAAAATCTATTAG 1262
|| |||| | || || | || | || |||||||||| ||||||||
Sbjct 449 AGTAATTAGGG-AGATGTACAACAATAAGCTTTTAGCTGATTCTTGACATCGTCTATTAG 391
Query 1263 TACATAGAGAATACGCTCGTAATGGGTTGAATCCAATTAAATATTCAGTTGGACAACCTA 1322
|| |||||| | | | ||| || | || | || |||||| | ||||| |||||||
Sbjct 390 TAGATAGAGTTTTCACCTATAA--GGATCAA-CAGATGAAATATGCTGTTGGTCAACCTA 334
Query 1323 TGGGGGCGTATTCGTCCTGACCTGCTTTCA-CATTATCTCATCATCT-TGTCGTTCATTG 1380
|||| || || || ||| | || || | | ||| |||||||||| ||| || || ||
Sbjct 333 TGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTA-CTCATCATCTATGT-GTGCACTG 276
Query 1381 ATGTGCACATTTGT---GTCATATCAATAAA----TTCAAAGATTATATAATTCTTGGTG 1433
||||||| | || || || |||||| |||||| | ||||| ||| | || |
Sbjct 275 ATGTGCATACTTAGAAGGTTAT-TCAATAGGATCTTTCAAAAACTATATGATTTTGGGAG 217
Query 1434 ACGATATCGTTATACATAATGATAAAGTTGCTAAAAAATATATAGAAATAATGGGAAAGT 1493
| ||||| || || | ||||||||||| | | ||| | | ||||| | ||
Sbjct 216 ATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATTAATGAGTAAAC 157
Query 1494 TAGGAGTGGGTCTATCAGATAGTAAAACTCACGTATCGAAAGATACATATGAATTTGCTA 1553
| || || | | | || | || |||||||| |||||| |||||| |||||||||||||
Sbjct 156 TTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAATTTGCTA 97
Query 1554 AAAGATGAATC 1564
|||||||||||
Sbjct 96 AAAGATGAATC 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8169593403048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |