Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_012585.1 Length=2896 Score E Sequences producing significant alignments: (Bits) Value seq74 140 6e-30 >seq74 Length=1504 Score = 140 bits (154), Expect = 6e-30 Identities = 419/640 (65%), Gaps = 55/640 (9%) Strand=Plus/Minus Query 1006 GGTAAATTAGGTATTGTTAAAGATCCGGAAGGTAAAAGAAGAATAATTGCAATGGTAGAT 1065 |||||| | | |||||||||||||| ||| ||| | ||| | || || ||| | || Sbjct 694 GGTAAACTGGCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGAC 635 Query 1066 TACCATTCACAATTAGTTCTTCGTTCAATCCATGATGGGCTTCTTAATAAATTAAGAAAC 1125 || ||||| ||| |||||||| | |||||||||| ||||||| ||| ||||||| Sbjct 634 TATCATTCTCAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAAA 575 Query 1126 CTACCACAGGATAGAACATACAATCAAGATCCTAAC---AATGCGTGAGA---AGAGAAT 1179 ||||| ||||||||||| | |||| ||| | ||| | | || ||| Sbjct 574 TTACCATGTGATAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACTCAGTCAAT 515 Query 1180 AAGGAATGTT--TCCATTCCTTAGATTTATCATCAGCCACTGATAGATTCCCAGTAAAAC 1237 | ||| || || ||| || || | | || ||||||||||| ||||| | | Sbjct 514 GATCAATTTTGATCAATTGATTTGAGTGCT-----GCTACTGATAGATTTCCAGTTACTC 460 Query 1238 TGCAATCTAGACTGCTTACAGAGATGTATTCAGATCCTAGTTTTGGAGAGAACTGAATGA 1297 | ||| | | | ||| |||||||| || ||| | || ||| Sbjct 459 TCCAAAAGAAAGTAATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTGACATC 400 Query 1298 ATCTGCTCTTAAATAGAGATT--ATCTATTGCCAGAAGAAGGCCTATCGGGTGAAAGATT 1355 ||| | || |||||| || | |||| |||| | | | ||||| Sbjct 399 GTCTATTAGTAGATAGAGTTTTCACCTAT---------AAGGATCAACAGATGAAA---- 353 Query 1356 GCGTTATGCAGTCGGTCAACCGATGGGTGCTTATTCTAGTTGAGCAGCATTCACACTTTC 1415 ||||| || |||||||| ||||||||||| ||||||||||||||||| | ||| | Sbjct 352 ----TATGCTGTTGGTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTAC 297 Query 1416 TCACCACTTAGTAGTTGCCTGATGTACTTATAAGTCAAAGAAGGTCAT-----AAGATCT 1470 ||| || || || ||||||| | || | ||||||| || | ||||| Sbjct 296 TCATCATCTATGTGTGCACTGATGTGCATA-----CTTAGAAGGTTATTCAATAGGATCT 242 Query 1471 TCTCAA----TATATTATACTTGGTGATGATATTGTCATTAAAGACAATGACATCGCAAG 1526 | |||| ||||| || | || ||||||||||| ||||| |||||| | | | Sbjct 241 T-TCAAAAACTATATGATTTTGGGAGATGATATTGTAATTAA---CAATGATAAAGTATC 186 Query 1527 AA--AGTATATTGGACA--AATGAGTAAATTAGGTGTTGCTATTTCAATGCAAAAGACAC 1582 | || ||| | ||| |||||||||| | ||||| | |||||| | | || || | Sbjct 185 ATCTAG-ATACTTTACATTAATGAGTAAACTTGGTGTAGATATTTCTGTTAACAAAACTC 127 Query 1583 ATGTATCGAAAGATACATATGAATTTGCAAAGAGATGAAT 1622 |||||||| |||||| ||||||||||| || |||||||| Sbjct 126 ATGTATCGTTAGATACTTATGAATTTGCTAAAAGATGAAT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9155192389740