Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_012585.1
Length=2896
Score E
Sequences producing significant alignments: (Bits) Value
seq74 140 6e-30
>seq74
Length=1504
Score = 140 bits (154), Expect = 6e-30
Identities = 419/640 (65%), Gaps = 55/640 (9%)
Strand=Plus/Minus
Query 1006 GGTAAATTAGGTATTGTTAAAGATCCGGAAGGTAAAAGAAGAATAATTGCAATGGTAGAT 1065
|||||| | | |||||||||||||| ||| ||| | ||| | || || ||| | ||
Sbjct 694 GGTAAACTGGCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGAC 635
Query 1066 TACCATTCACAATTAGTTCTTCGTTCAATCCATGATGGGCTTCTTAATAAATTAAGAAAC 1125
|| ||||| ||| |||||||| | |||||||||| ||||||| ||| |||||||
Sbjct 634 TATCATTCTCAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAAA 575
Query 1126 CTACCACAGGATAGAACATACAATCAAGATCCTAAC---AATGCGTGAGA---AGAGAAT 1179
||||| ||||||||||| | |||| ||| | ||| | | || |||
Sbjct 574 TTACCATGTGATAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACTCAGTCAAT 515
Query 1180 AAGGAATGTT--TCCATTCCTTAGATTTATCATCAGCCACTGATAGATTCCCAGTAAAAC 1237
| ||| || || ||| || || | | || ||||||||||| ||||| | |
Sbjct 514 GATCAATTTTGATCAATTGATTTGAGTGCT-----GCTACTGATAGATTTCCAGTTACTC 460
Query 1238 TGCAATCTAGACTGCTTACAGAGATGTATTCAGATCCTAGTTTTGGAGAGAACTGAATGA 1297
| ||| | | | ||| |||||||| || ||| | || |||
Sbjct 459 TCCAAAAGAAAGTAATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTGACATC 400
Query 1298 ATCTGCTCTTAAATAGAGATT--ATCTATTGCCAGAAGAAGGCCTATCGGGTGAAAGATT 1355
||| | || |||||| || | |||| |||| | | | |||||
Sbjct 399 GTCTATTAGTAGATAGAGTTTTCACCTAT---------AAGGATCAACAGATGAAA---- 353
Query 1356 GCGTTATGCAGTCGGTCAACCGATGGGTGCTTATTCTAGTTGAGCAGCATTCACACTTTC 1415
||||| || |||||||| ||||||||||| ||||||||||||||||| | ||| |
Sbjct 352 ----TATGCTGTTGGTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTAC 297
Query 1416 TCACCACTTAGTAGTTGCCTGATGTACTTATAAGTCAAAGAAGGTCAT-----AAGATCT 1470
||| || || || ||||||| | || | ||||||| || | |||||
Sbjct 296 TCATCATCTATGTGTGCACTGATGTGCATA-----CTTAGAAGGTTATTCAATAGGATCT 242
Query 1471 TCTCAA----TATATTATACTTGGTGATGATATTGTCATTAAAGACAATGACATCGCAAG 1526
| |||| ||||| || | || ||||||||||| ||||| |||||| | | |
Sbjct 241 T-TCAAAAACTATATGATTTTGGGAGATGATATTGTAATTAA---CAATGATAAAGTATC 186
Query 1527 AA--AGTATATTGGACA--AATGAGTAAATTAGGTGTTGCTATTTCAATGCAAAAGACAC 1582
| || ||| | ||| |||||||||| | ||||| | |||||| | | || || |
Sbjct 185 ATCTAG-ATACTTTACATTAATGAGTAAACTTGGTGTAGATATTTCTGTTAACAAAACTC 127
Query 1583 ATGTATCGAAAGATACATATGAATTTGCAAAGAGATGAAT 1622
|||||||| |||||| ||||||||||| || ||||||||
Sbjct 126 ATGTATCGTTAGATACTTATGAATTTGCTAAAAGATGAAT 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 9155192389740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |