Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_026510.1 Length=2530 Score E Sequences producing significant alignments: (Bits) Value seq74 95.1 2e-16 seq75 91.5 2e-15 >seq74 Length=1504 Score = 95.1 bits (104), Expect = 2e-16 Identities = 396/611 (65%), Gaps = 33/611 (5%) Strand=Plus/Minus Query 1008 CAATAGTTGAAGATCCTGAGCTGAAGATGAGACCAATAGCTATGGTTGATTACTATAGTC 1067 |||| ||| |||||||||| || || |||| ||||| ||| |||| || || || Sbjct 684 CAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGACTATCATTCTC 625 Query 1068 AATTGGTTCTGCGTCCGATTCATGATGGAATTCTTAAGAAATTAAGAAACCTCCCTCAAG 1127 || | ||||| || || ||||||| |||||| || ||||||| | || | Sbjct 624 AAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAAATTACCATGTG 565 Query 1128 ATAGGACATTCACTCAGAATCC---CTTTAACA-ACTGGGGTAAGACCATGGGGCACAAG 1183 |||| |||| ||||| | ||| |||||| | | | | || | ||| ||| Sbjct 564 ATAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACTCAGTCAATGAT---CAA- 509 Query 1184 TTTTGATCACTCGATCTAACAAGTGCTACAGATCGTTTCCCTATATCTTTACAGGAGAAG 1243 ||||||||| | ||| | | |||||| ||| | || || | || | || |||| Sbjct 508 TTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTACTCTCCAAAAGAAA 449 Query 1244 GTAAT-AGCCGGTCTTCTAAAAGACCCAG-TTAAAGCCAAAGCCTGACGAGATATATTAG 1301 ||||| || || | || || | || || ||| | | |||| | |||||| Sbjct 448 GTAATTAG--GGAGATGTACAACAATAAGCTTTTAGCTGATTCTTGACATCGTCTATTAG 391 Query 1302 TTGATAGGGATTATAAGCTACCCACTGGAGGATTTACACGTTACAG----TGTTGGTCAA 1357 | ||||| | || | | ||| ||||| ||| | | | |||||||||| Sbjct 390 TAGATAGAGTTT-TCACCTATA------AGGATCAACAGATGAAATATGCTGTTGGTCAA 338 Query 1358 CCTATGGGTGCTTATAGTTCTTGGACAACTTTTACTCTTACACACCACATGGTTGTTCAC 1417 |||||||||||||| | ||| || | |||| ||||| || || | ||| ||| Sbjct 337 CCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTATGTGTGCAC 278 Query 1418 T-ATGCTGCACATTTGTGCGGT------ATAGGGGATTTTAACAAGTATATATTGCTTGG 1470 | ||| |||| | || ||| ||||| ||| || || ||||| | | || Sbjct 277 TGATG-TGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATATGATTTTGGG 219 Query 1471 AGACGATATCGTGATTAATCATGATAAAGTAGCCAGGGCATA-TATCCGTGTTATGACCA 1529 ||| ||||| || ||||| ||||||||||| | ||| | | | | | |||| | Sbjct 218 AGATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACAT-TAATGAGTA 160 Query 1530 AGCTTGGTGTGGATATCTCAGTTGCAAAGACACATGTGTCCAAAAACACATATGAATTTG 1589 | |||||||| ||||| || ||| || || ||||| || | | || |||||||||| Sbjct 159 AACTTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAATTTG 100 Query 1590 CTAAGAGATGA 1600 |||| |||||| Sbjct 99 CTAAAAGATGA 89 >seq75 Length=1460 Score = 91.5 bits (100), Expect = 2e-15 Identities = 176/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 1349 GTTGGTCAACCTATGGGTGCTTATAGTTCTTGGACAACTTTTACTCTTACACACCACATG 1408 ||||||||||| ||||| ||||||| |||| | | || || | | ||||| | Sbjct 477 GTTGGTCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTT 536 Query 1409 GTTGTTCACTATGCTGCACATTTGTGCGGTATAGGGGATTTTAACAAGTATATATTGCTT 1468 || || || || ||| | | |||||| ||| ||||||| | |||||| | | Sbjct 537 GTAATTGCCTGAGCCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTA 596 Query 1469 GGAGACGATATCGTGATTAATCATGATAAAGTAG--CCAGGGCATATATCCGTGTTATGA 1526 || |||||| | ||||| || || ||||||| | | | | ||||| | | | |||| Sbjct 597 GGTGACGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAGTATATAAC--TTTAATGA 654 Query 1527 CCAAGCT-TGGTGTGGATATCTCAGTTGCAAAGACACATGTGTCCAAAAACACATATGAA 1585 |||| | || || || ||||| ||||||||||||| |||| ||||||||| Sbjct 655 -CAAGATGAGGAGTTGAGATCTCTCCAACAAAGACACATGTTAGTAAAACAACATATGAA 713 Query 1586 TTTGCTAAGAGATGA 1600 ||||| ||||||||| Sbjct 714 TTTGCGAAGAGATGA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7987193550336