Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_026622.1 Length=2423 Score E Sequences producing significant alignments: (Bits) Value seq75 116 6e-23 seq74 105 1e-19 >seq75 Length=1460 Score = 116 bits (128), Expect = 6e-23 Identities = 396/602 (66%), Gaps = 24/602 (4%) Strand=Plus/Plus Query 881 ATTGTTAAAGATCCTGAAGGTAAAAGAA-GAGTTATTGCAATGGTAGATTA--CCATTCA 937 || ||| | |||||||| | |||||||| | || ||||| |||||||| || ||| ||| Sbjct 144 ATAGTTCATGATCCTGA-GTTAAAAGAAAGGGTAATTGCCATGGTAGACTATACCACTCA 202 Query 938 CAATTAGCTCTTAAATCTATTCATAATGATTTACTTGATTTATTAAGTAAATTTAAATGT 997 ||| ||||| |||| ||| || | | ||| || || | || || |||| Sbjct 203 --ATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAGAAGTTACCATGT 260 Query 998 GATAGAACTTTTACTCAAGATCCTCTACATAACTGGAGTAATAATAAAGAAAGTTACTTT 1057 |||||||| ||||||||||||||| | ||| || ||| ||| | || | || | | Sbjct 261 GATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGATGAGAATTTTTAT 320 Query 1058 TCGTTAGATCTGTCATCAGCTACTGATAGATTTCCTGTAGAATTAC-AGAAACGATTATT 1116 || | ||| || || || ||||||||||||||| | |||||| ||||| | | || Sbjct 321 TCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAATTACAAGAAAAG-CTCTT 379 Query 1117 GGCAGAAATTTATCAAGATGATAAATTTGCTACTAATTGAATGGAACTTCTACTAAATAG 1176 || |||||| | || || | |||||| ||||||| ||||| || || | Sbjct 380 AGCCATTATTTATAATGACTATGAGTTTGCTCGTAATTGACGTAGCCTTCTTATAGATCG 439 Query 1177 ---AGACTATATAGGTCCCGGAGGTGAGATCTGCAGATATTCTGTAGGTCAACCAATGGG 1233 ||| | | | | || | || | | ||||| || |||||||||||||| Sbjct 440 CCCCTACTGGTTTGATTCAAAAG--AATAT-TAC---TATTCAGTTGGTCAACCAATGGG 493 Query 1234 AGCATATAGCTCTTGAGCCGCATTCACTCTTACTCATCATTTAGTTGTTAGTTGAAGTGC 1293 ||| |||| ||| || || ||||| | |||| ||| | || || ||| || Sbjct 494 AGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTAATTGCCTGAGCCGC 553 Query 1294 -ATATAAAGCACTTAAAACTAAAAACTTTGATCAATATATTATATTAGGTGATGACATTG 1352 | | | || || | | || ||| | | ||||| || |||||||| || ||| Sbjct 554 AAAACTATGCGGTTTA----GATAATTTTAAAGATTATATAATTTTAGGTGACGATGTTG 609 Query 1353 TTATTAAAAATAATGAAATCGCAAATATATATAGAGGTCAAATGATGCGTATG-GGTGTT 1411 | || ||| | ||| || | || | | |||| | | ||||| | ||| || ||| Sbjct 610 TGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAG-ATGAGGAGTT 668 Query 1412 GACATCTCAATGCCAAAGACACATATATCCAAAGATACATATGAATTTGCAAAAAGATGA 1471 || ||||| ||||||||||| | ||| |||||||||||||| || |||||| Sbjct 669 GAGATCTCTCCAACAAAGACACATGTTAGTAAAACAACATATGAATTTGCGAAGAGATGA 728 Query 1472 AT 1473 || Sbjct 729 AT 730 >seq74 Length=1504 Score = 105 bits (116), Expect = 1e-19 Identities = 426/653 (65%), Gaps = 55/653 (8%) Strand=Plus/Minus Query 881 ATTGTTAAAGATCCTGAAGGTAAAAGAAGAGTTATTGCAATGGTAGATTACCATTCACAA 940 |||||||||||||||||| ||| | ||||| || || ||| | || || ||||| ||| Sbjct 682 ATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGACTATCATTCTCAA 623 Query 941 TTAGCTCTTAAATCTATTCATAATGATTTACTTGATTTAT-TAAGTAAATTTAAATGTGA 999 ||| ||||||| | || ||| ||||| | ||| | | || |||| ||||| |||||| Sbjct 622 GTAGTTCTTAAACCCATCCATGATGATCTTCTT-AGTAATCTAAGAAAATTACCATGTGA 564 Query 1000 TAGAACTTTTACTCAAGATCC--TC-----TACA--TAACTGGAGT-AATAATAAAGAAA 1049 |||||| | ||||||| ||| || |||| | ||| ||| ||| || || Sbjct 563 TAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACT-CAGTCAATGATCAA---- 509 Query 1050 GTTACTTTTCGTTAGATCTGTCATCAGCTACTGATAGATTTCCTGTAGAATTACAGAAAC 1109 | | || | ||| || | ||||||||||||||||| || | || || Sbjct 508 --TTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTACTCTCCAAAAGA 451 Query 1110 GATTA--TTGGCAGAAATTTATCAAGATGATAAATTTGCTACTAATTGA-ATGGAACTTC 1166 | || | || ||| | | ||| | | | || ||| | |||| || | || Sbjct 450 AAGTAATTAGGGAGATGTACAACAATAAGCT--TTTAGCTGATTCTTGACATCG-TCTAT 394 Query 1167 TACTAAATAGAG------ACTATATAGGTCCCGGAGGTGAGATCTGCAGATATTCTGTAG 1220 || || |||||| ||||| ||| | || || | |||| |||| | Sbjct 393 TAGTAGATAGAGTTTTCACCTATA-AGGATCAACAGATG--------AAATATGCTGTTG 343 Query 1221 GTCAACCAATGGGAGCATA---TAGCTCTTGAGCCGCATTCACTCTTACTCATCATTTAG 1277 ||||||| ||||| || || ||| |||||| ||||| | |||||||||||| || Sbjct 342 GTCAACCTATGGGTGCTTACTCTAG---TTGAGCAGCATTTAGCCTTACTCATCATCTAT 286 Query 1278 TTGTTAGTTGAAGTGCATATAAAGCA-CTTA-AAACTAAAAACTTTGATCAA-TATATTA 1334 ||| ||| ||||||| || | ||| | || | |||| | || ||||| | Sbjct 285 GTGTGCACTGATGTGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATATGA 226 Query 1335 TATTAGGTGATGACATTGTTATTAAAAATAATGAAATCGCAAATATATATAGAGGTCAAA 1394 | || || ||||| ||||| ||||| ||| || || | || || ||| | | Sbjct 225 TTTTGGGAGATGATATTGTAATTAACAATGATAAAGTATCATCTAGATA---CTTTACAT 169 Query 1395 TGATGCGTA---TGGGTGTTGACATCTCAATGCCAAAGACACATATATCCAAAGATACAT 1451 | ||| ||| | ||||| || || || | || || ||| |||| |||||| | Sbjct 168 TAATGAGTAAACTTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTT 109 Query 1452 ATGAATTTGCAAAAAGATGAATTAAAGACGGTAAGGAAATATCTGGTATACCA 1504 |||||||||| ||||||||||| | ||||||||| || |||| ||||| Sbjct 108 ATGAATTTGCTAAAAGATGAATCTGCGCCGGTAAGGAGATTACTGGATTACCA 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7644793826824