Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_028471.1
Length=2497
Score E
Sequences producing significant alignments: (Bits) Value
seq75 181 2e-42
seq74 136 6e-29
>seq75
Length=1460
Score = 181 bits (200), Expect = 2e-42
Identities = 434/645 (67%), Gaps = 20/645 (3%)
Strand=Plus/Plus
Query 1016 CAATTGTTAAGGATCCAGAGTTAAAACAAAGAGCAATTGCTATGGTAGACTACTATAGTC 1075
|||| ||| | ||||| ||||||||| |||| | |||||| ||||||||||| | ||
Sbjct 142 CAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAGACTATACCACTC 201
Query 1076 AATTAGTTCTTCGGCCTATCCATGATGGACTTCTTA-ATAAATTAAGAAATCTACCACAA 1134
|||| |||||| |||||||||||| |||||||| || | ||||| | |||||
Sbjct 202 AATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAGAAGT-TACCATGT 260
Query 1135 GATAGGACATTCACTCAAAATCCTTTCAATAATTGAGGGAA-AACGATGGGTAACAGCTT 1193
||||| || || |||||| ||||||| || |||| || || |||| | | ||
Sbjct 261 GATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGATGAGAAT----TT 316
Query 1194 TTGATCGTTAGATCTAAGTTCTGCGACAGATCGTTTCCCGATTTCACTTCAAGAGAAAGT 1253
|| || | ||| | ||||| || || ||| | || || || | | ||||| ||||
Sbjct 317 TTATTCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAATTACAAGA-AAAGC 375
Query 1254 TCTT-GCTTCAATCTTAAAAGATGAGGCAAAAGCTGAAACTTGAAGGAAGATCCTTATTG 1312
|||| || || | || || | | ||| | |||| | | | ||||| |
Sbjct 376 TCTTAGCCATTATTTATAATGACTATGAGTTTGCTCGTAATTGACGTAGCCTTCTTATAG 435
Query 1313 AAAGGGACTATAAACTTC---CAAATGGAAATCTAACACGTTATAGTGTTGGACAACCAA 1369
| | ||| || |||| | ||| | || ||| ||||| |||||||
Sbjct 436 ATCGCCCCTACTGGTTTGATTCAAAAG--AATATTAC----TATTCAGTTGGTCAACCAA 489
Query 1370 TGGGAGCTTATAGTTCTTGAACTGCTTTTACTATTTCACACCACTTAGTTGTTCACTTTG 1429
|||||||||||| ||| |||| || || | | ||||| | || || || |
Sbjct 490 TGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTAATTGCCTGAG 549
Query 1430 CCGCACATTTGTGTGGTATAGAGAACTTTGATAAATATATTTTACTAGGTGACGATATTG 1489
||||| | | || ||| |||| || ||| | | ||||| | ||||||||||| |||
Sbjct 550 CCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGGTGACGATGTTG 609
Query 1490 TTATAAATAACGATAAAGTTGCCCGTAAATATATTAAAATCATGACTAAGTTAGGTGTGG 1549
| ||||| || |||||||||| | || ||||| | | ||||| | | ||| || |
Sbjct 610 TGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAGATGAGGAGTTG 669
Query 1550 ATATATCTATTAACAAA-ACTCATGTAAGTAAAAATACTTATGAGTTTGCTAAGAGATGA 1608
| || ||| |||||| || ||||| ||||||| || ||||| ||||| |||||||||
Sbjct 670 AGATCTCT-CCAACAAAGACACATGTTAGTAAAACAACATATGAATTTGCGAAGAGATGA 728
Query 1609 GTAAAACACAATATAGAGATCACTGGAATTCCTTTAAGAGGTATT 1653
| || ||||| ||||| | ||| | || ||||||| |||
Sbjct 729 ATCCAAAACAATCGTGAGATTAGCGGACTATCTCTAAGAGGAATT 773
>seq74
Length=1504
Score = 136 bits (150), Expect = 6e-29
Identities = 400/608 (66%), Gaps = 25/608 (4%)
Strand=Plus/Minus
Query 1015 GCAATTGTTAAGGATCCAGAGTTAAAACAAAGAGCAATTGCTATGGTAGACTACTATAGT 1074
||||||||||| ||||| || |||||| |||| || || ||| | ||||| || |
Sbjct 685 GCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGACTATCATTCT 626
Query 1075 CAATTAGTTCTTCGGCCTATCCATGATGGACTTCTTAATAAATTAAGAAATCTACCACAA 1134
||| |||||||| || |||||||||| ||||||| ||| ||||||| |||||
Sbjct 625 CAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAAATTACCATGT 566
Query 1135 GATAGGACATTCACTCAAAATCCTTTCAATAATTGAGGGAAAACGATGGGTAACAGCTTT 1194
||||| |||| ||||||| ||| ||| |||| || | | | | | |||
Sbjct 565 GATAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACTCAGTCAATGATCAATTT 506
Query 1195 TGATCGTTAGATCTAAGTTCTGCGACAGATCGTTTCCCGATTTCACTTCAAGAGAAAGTT 1254
||||| | ||| | ||| |||| || ||| | || || || | || ||| |||||||
Sbjct 505 TGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTACTCTCCAAAAGAAAGTA 446
Query 1255 CTTGCTTCAATCTTAAAAGATGAGGCAAAAGCTGAAACTTGAAGGAAGATCCT-TATT-- 1311
|| || | || || || |||||| |||| | ||| | ||||
Sbjct 445 ATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTG-----ACATCGTCTATTAG 391
Query 1312 GAAAGGGACTATAAACTTCCAAATGGAAATCTAACACGT----TATAGTGTTGGACAACC 1367
| | || | | || | | | || ||| |||| | ||| |||||| |||||
Sbjct 390 TAGATAGAGTTTTCAC--CTATAAGG--ATC-AACAGATGAAATATGCTGTTGGTCAACC 336
Query 1368 AATGGGAGCTTATAGTTCTTGAACTGCTTTTACTATTTCACACCACTTAGTTGTTCACTT 1427
||||| ||||| | |||| | || |||| || | || || || ||| ||||
Sbjct 335 TATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTATGTGTGCACTG 276
Query 1428 TGCCGCACATTTGTGTGGT------ATAGAGAACTTTGATAAA-TATATTTTACTAGGTG 1480
||| | || ||| |||| || |||| | ||| ||||| | | || |
Sbjct 275 ATGTGCATACTTAGAAGGTTATTCAATAG-GATCTTTCAAAAACTATATGATTTTGGGAG 217
Query 1481 ACGATATTGTTATAAATAACGATAAAGTTGCCCGTAAATATATTAAAATCATGACTAAGT 1540
| |||||||| || || || |||||||| | || ||| ||| | | |||| |||
Sbjct 216 ATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATTAATGAGTAAAC 157
Query 1541 TAGGTGTGGATATATCTATTAACAAAACTCATGTAAGTAAAAATACTTATGAGTTTGCTA 1600
| ||||| ||||| ||| ||||||||||||||||| | |||||||||| |||||||
Sbjct 156 TTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAATTTGCTA 97
Query 1601 AGAGATGA 1608
| ||||||
Sbjct 96 AAAGATGA 89
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7881593635608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |