Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028471.1 Length=2497 Score E Sequences producing significant alignments: (Bits) Value seq75 181 2e-42 seq74 136 6e-29 >seq75 Length=1460 Score = 181 bits (200), Expect = 2e-42 Identities = 434/645 (67%), Gaps = 20/645 (3%) Strand=Plus/Plus Query 1016 CAATTGTTAAGGATCCAGAGTTAAAACAAAGAGCAATTGCTATGGTAGACTACTATAGTC 1075 |||| ||| | ||||| ||||||||| |||| | |||||| ||||||||||| | || Sbjct 142 CAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAGACTATACCACTC 201 Query 1076 AATTAGTTCTTCGGCCTATCCATGATGGACTTCTTA-ATAAATTAAGAAATCTACCACAA 1134 |||| |||||| |||||||||||| |||||||| || | ||||| | ||||| Sbjct 202 AATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAGAAGT-TACCATGT 260 Query 1135 GATAGGACATTCACTCAAAATCCTTTCAATAATTGAGGGAA-AACGATGGGTAACAGCTT 1193 ||||| || || |||||| ||||||| || |||| || || |||| | | || Sbjct 261 GATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGATGAGAAT----TT 316 Query 1194 TTGATCGTTAGATCTAAGTTCTGCGACAGATCGTTTCCCGATTTCACTTCAAGAGAAAGT 1253 || || | ||| | ||||| || || ||| | || || || | | ||||| |||| Sbjct 317 TTATTCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAATTACAAGA-AAAGC 375 Query 1254 TCTT-GCTTCAATCTTAAAAGATGAGGCAAAAGCTGAAACTTGAAGGAAGATCCTTATTG 1312 |||| || || | || || | | ||| | |||| | | | ||||| | Sbjct 376 TCTTAGCCATTATTTATAATGACTATGAGTTTGCTCGTAATTGACGTAGCCTTCTTATAG 435 Query 1313 AAAGGGACTATAAACTTC---CAAATGGAAATCTAACACGTTATAGTGTTGGACAACCAA 1369 | | ||| || |||| | ||| | || ||| ||||| ||||||| Sbjct 436 ATCGCCCCTACTGGTTTGATTCAAAAG--AATATTAC----TATTCAGTTGGTCAACCAA 489 Query 1370 TGGGAGCTTATAGTTCTTGAACTGCTTTTACTATTTCACACCACTTAGTTGTTCACTTTG 1429 |||||||||||| ||| |||| || || | | ||||| | || || || | Sbjct 490 TGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTAATTGCCTGAG 549 Query 1430 CCGCACATTTGTGTGGTATAGAGAACTTTGATAAATATATTTTACTAGGTGACGATATTG 1489 ||||| | | || ||| |||| || ||| | | ||||| | ||||||||||| ||| Sbjct 550 CCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGGTGACGATGTTG 609 Query 1490 TTATAAATAACGATAAAGTTGCCCGTAAATATATTAAAATCATGACTAAGTTAGGTGTGG 1549 | ||||| || |||||||||| | || ||||| | | ||||| | | ||| || | Sbjct 610 TGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAGATGAGGAGTTG 669 Query 1550 ATATATCTATTAACAAA-ACTCATGTAAGTAAAAATACTTATGAGTTTGCTAAGAGATGA 1608 | || ||| |||||| || ||||| ||||||| || ||||| ||||| ||||||||| Sbjct 670 AGATCTCT-CCAACAAAGACACATGTTAGTAAAACAACATATGAATTTGCGAAGAGATGA 728 Query 1609 GTAAAACACAATATAGAGATCACTGGAATTCCTTTAAGAGGTATT 1653 | || ||||| ||||| | ||| | || ||||||| ||| Sbjct 729 ATCCAAAACAATCGTGAGATTAGCGGACTATCTCTAAGAGGAATT 773 >seq74 Length=1504 Score = 136 bits (150), Expect = 6e-29 Identities = 400/608 (66%), Gaps = 25/608 (4%) Strand=Plus/Minus Query 1015 GCAATTGTTAAGGATCCAGAGTTAAAACAAAGAGCAATTGCTATGGTAGACTACTATAGT 1074 ||||||||||| ||||| || |||||| |||| || || ||| | ||||| || | Sbjct 685 GCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGACTATCATTCT 626 Query 1075 CAATTAGTTCTTCGGCCTATCCATGATGGACTTCTTAATAAATTAAGAAATCTACCACAA 1134 ||| |||||||| || |||||||||| ||||||| ||| ||||||| ||||| Sbjct 625 CAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAAATTACCATGT 566 Query 1135 GATAGGACATTCACTCAAAATCCTTTCAATAATTGAGGGAAAACGATGGGTAACAGCTTT 1194 ||||| |||| ||||||| ||| ||| |||| || | | | | | ||| Sbjct 565 GATAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACTCAGTCAATGATCAATTT 506 Query 1195 TGATCGTTAGATCTAAGTTCTGCGACAGATCGTTTCCCGATTTCACTTCAAGAGAAAGTT 1254 ||||| | ||| | ||| |||| || ||| | || || || | || ||| ||||||| Sbjct 505 TGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTACTCTCCAAAAGAAAGTA 446 Query 1255 CTTGCTTCAATCTTAAAAGATGAGGCAAAAGCTGAAACTTGAAGGAAGATCCT-TATT-- 1311 || || | || || || |||||| |||| | ||| | |||| Sbjct 445 ATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTG-----ACATCGTCTATTAG 391 Query 1312 GAAAGGGACTATAAACTTCCAAATGGAAATCTAACACGT----TATAGTGTTGGACAACC 1367 | | || | | || | | | || ||| |||| | ||| |||||| ||||| Sbjct 390 TAGATAGAGTTTTCAC--CTATAAGG--ATC-AACAGATGAAATATGCTGTTGGTCAACC 336 Query 1368 AATGGGAGCTTATAGTTCTTGAACTGCTTTTACTATTTCACACCACTTAGTTGTTCACTT 1427 ||||| ||||| | |||| | || |||| || | || || || ||| |||| Sbjct 335 TATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTATGTGTGCACTG 276 Query 1428 TGCCGCACATTTGTGTGGT------ATAGAGAACTTTGATAAA-TATATTTTACTAGGTG 1480 ||| | || ||| |||| || |||| | ||| ||||| | | || | Sbjct 275 ATGTGCATACTTAGAAGGTTATTCAATAG-GATCTTTCAAAAACTATATGATTTTGGGAG 217 Query 1481 ACGATATTGTTATAAATAACGATAAAGTTGCCCGTAAATATATTAAAATCATGACTAAGT 1540 | |||||||| || || || |||||||| | || ||| ||| | | |||| ||| Sbjct 216 ATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATTAATGAGTAAAC 157 Query 1541 TAGGTGTGGATATATCTATTAACAAAACTCATGTAAGTAAAAATACTTATGAGTTTGCTA 1600 | ||||| ||||| ||| ||||||||||||||||| | |||||||||| ||||||| Sbjct 156 TTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAATTTGCTA 97 Query 1601 AGAGATGA 1608 | |||||| Sbjct 96 AAAGATGA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7881593635608