Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028474.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq75 221 2e-54 seq74 197 2e-47 >seq75 Length=1460 Score = 221 bits (244), Expect = 2e-54 Identities = 423/610 (69%), Gaps = 19/610 (3%) Strand=Plus/Plus Query 1172 GGTAAATTGTCGATTGTTAAAGATCCTGAATTAAAAAGAAGAGTGATTGCTATGGTTGAT 1231 |||||| | || || ||| | |||||||| |||||| ||| || ||||| ||||| || Sbjct 132 GGTAAACTTTCAATAGTTCATGATCCTGAGTTAAAAGAAAGGGTAATTGCCATGGTAGAC 191 Query 1232 TA--CCATTCGCAATTTACTCTAAAACCTATACATGAAATGCTTCTTAATAAATTAAGGA 1289 || ||| || |||||||||| ||||| ||||| ||||||| || | || Sbjct 192 TATACCACTC--AATTTACTCTTCGTCCTATCCATGATCAACTTCTTACATTGTTGAAGA 249 Query 1290 CATTAAAATGTGATAGGACTTTTACTCAAGATCCCAAACATAGCTGATATGTCAATAACG 1349 ||| ||||||||| || |||||||||||||| ||| |||| | ||| | | Sbjct 250 AGTTACCATGTGATAGAACGTTTACTCAAGATCCTTTTCATTCTTGATCTAAGAATGATG 309 Query 1350 AGAAGTTCTTCTCACTTGACCTAAGTGCAGCAACAGATAGATTCCCTTTACAATTGCAGA 1409 |||| || | |||||||| | ||| | ||||| |||||||| ||| | |||| || Sbjct 310 AGAATTTTTATTCACTTGATTTGAGTTCCGCAACTGATAGATTTCCTATCAAATTACAAG 369 Query 1410 AGAAATTATTATCA--TATATATA-TGAAAATAAAGATTTCT-GTGATGCATGA-GCAGA 1464 | || | ||| | ||| |||| ||| || | | || || || || ||| | || Sbjct 370 AAAAGCTCTTAGCCATTATTTATAATGACTATGA-GTTTGCTCGTAAT---TGACGTAGC 425 Query 1465 TTTATTAACTTCAAGAGTTTATATTGATTCCGATGGTTTACAACATAAATATAATGTTGG 1524 || ||| | | | || || || ||| | || || | ||| ||||| Sbjct 426 CTTCTTA---TAGATCGCCCCTACTGGTTT-GATTCAAAAGAATATTACTATTCAGTTGG 481 Query 1525 TCAACCAATGGGAGCTTATAGTTCTTGAGCCGCCTTTACAATTACTCACCATCTAGTAGT 1584 |||||||||||||||||||| ||| || || || ||| | |||||||||| ||| | Sbjct 482 TCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTAAT 541 Query 1585 TGCATGAGCCGCACATTTGTGTGGTGAATACAACTTTAGTCAGTATATAATACTTGGTGA 1644 ||| ||||||||| | | || ||| | | || |||| | |||||||| | ||||| Sbjct 542 TGCCTGAGCCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGGTGA 601 Query 1645 CGATATTGTTATTAAAAACAATAAAGTTGCCAATAAGTATATTACACTGATGACTAGATT 1704 |||| |||| || ||| ||||||||||||| | |||||||| || | ||||| |||| Sbjct 602 CGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAGATG 661 Query 1705 AGGTGTAGAAATATCTCTTCACAAA-ACTCATGTATCGAAAGATACTTATGAGTTTGCGA 1763 ||| || || || |||| ||||| || ||||| ||| || ||||| ||||||| Sbjct 662 AGGAGTTGAGATCTCTC-CAACAAAGACACATGTTAGTAAAACAACATATGAATTTGCGA 720 Query 1764 AAAGATGAAT 1773 | |||||||| Sbjct 721 AGAGATGAAT 730 >seq74 Length=1504 Score = 197 bits (218), Expect = 2e-47 Identities = 421/617 (68%), Gaps = 24/617 (4%) Strand=Plus/Minus Query 1172 GGTAAATTGTCGATTGTTAAAGATCCTGAATTAAAAAGAAGAGTGATTGCTATGGTTGAT 1231 |||||| || | |||||||||||||||||| ||||| | |||||||| || ||| |||| Sbjct 694 GGTAAACTGGCAATTGTTAAAGATCCTGAACTAAAACGGAGAGTGATAGCCATGCTTGAC 635 Query 1232 TACCATTCGCAATTTACTCTAAAACCTATACATGAAATGCTTCTTAATAAATTAAGGACA 1291 || ||||| ||| | ||| ||||| || ||||| ||||||| ||| |||| | | Sbjct 634 TATCATTCTCAAGTAGTTCTTAAACCCATCCATGATGATCTTCTTAGTAATCTAAGAAAA 575 Query 1292 TTAAAATGTGATAGGACTTTTACTCAA-----GATCCCAAACATAGCTGA-TATGTCAAT 1345 ||| ||||||||| || | ||||||| | || || | || | | | |||||| Sbjct 574 TTACCATGTGATAGAACATATACTCAAAGTCCGTTCTTTAATACAGTTCACTCAGTCAAT 515 Query 1346 AACGAGAAGTTCTTCTCACTTGACCTAAGTGCAGCAACAGATAGA-TTCCCTTTACAATT 1404 || | || | ||| |||| | ||||| || || |||||| |||| |||| | Sbjct 514 ---GATCAATTTTGATCAATTGATTTGAGTGCTGCTACTGATAGATTTCCAGTTAC-TCT 459 Query 1405 GCAGAAGAAATTATTATCATATATATATGAAAATAAAGATTTCTGTGATGCATGAGCAGA 1464 || |||||| || | | || || | ||||| ||| |||| | ||| Sbjct 458 CCAAAAGAAAGTAATTAGGGAGATGTACAACAATAAGCTTTTAGCTGATTCTTGACATCG 399 Query 1465 TTTATTAACTTCAAGAGTTTATATTGATTCCGATGGTTTACAACAT-AAATATAATGTTG 1523 | ||||| ||||||| | || | || | | | || |||||| ||||| Sbjct 398 TCTATTAGTAGATAGAGTTTTCACCTAT----AAGGATCAACAGATGAAATATGCTGTTG 343 Query 1524 GTCAACCAATGGGAGCTTATAGTTCTTGAGCCGCCTTTACAATTACTCACCATCTAGTAG 1583 ||||||| ||||| ||||| | |||||| || |||| ||||||| |||||| | Sbjct 342 GTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTA-TGT 284 Query 1584 TTGCA-TGAGCCGCACATTT----GTGTGGTGAATA-CAACTTT-AGTCAGTATATAATA 1636 |||| ||| ||| | || | | | |||| | |||| | | ||||| || Sbjct 283 GTGCACTGATGTGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATATGATT 224 Query 1637 CTTGGTGACGATATTGTTATTAAAAACAATAAAGTTGCCAATAAGTATATTACACTGATG 1696 | || || |||||||| ||||| || ||||||| | || || ||||| | ||| Sbjct 223 TTGGGAGATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATTAATG 164 Query 1697 ACTAGATTAGGTGTAGAAATATCTCTTCACAAAACTCATGTATCGAAAGATACTTATGAG 1756 | || | | |||||||| || ||| || ||||||||||||||||| |||||||||||| Sbjct 163 AGTAAACTTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAA 104 Query 1757 TTTGCGAAAAGATGAAT 1773 ||||| ||||||||||| Sbjct 103 TTTGCTAAAAGATGAAT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745592730220