Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028475.1 Length=2617 Score E Sequences producing significant alignments: (Bits) Value seq73 96.9 6e-17 >seq73 Length=2088 Score = 96.9 bits (106), Expect = 6e-17 Identities = 237/355 (67%), Gaps = 21/355 (6%) Strand=Plus/Minus Query 1288 TGACCTTTCGGCCGCAACGGATAGACTACCAATAAATCTCCAGAAAGATATTCTTTCGAT 1347 ||||||||| || || || |||||||| || ||| || ||| |||| ||||||||||| Sbjct 1232 TGACCTTTCAGCTGCTACTGATAGACTTCCGATATTGCTTCAGGAAGAGATTCTTTCGAT 1173 Query 1348 TTATTGT-GGTGAAAGTTTTGC-----CTCTAAGTGATCAATATTGAT-GACTGATAGAG 1400 || |||| || ||| |||| | || ||| |||| ||||| | ||| || || Sbjct 1172 TT-TTGTCGGAGAATCTTTTTCTAAAGCTTGAAGAGATC--TATTGGTAGACAGAGAGTA 1116 Query 1401 ACTGATACTTAA--CCAAAGAGAAACGT---------AATTTACGTTATTCTGTAGGTCA 1449 | ||| ||| | ||| || | | |||||| ||||| |||||||| Sbjct 1115 TGTTTTACCTAAATCTAAATTTAATCCTTCTGAATTAAATTTAAAATATTCGGTAGGTCA 1056 Query 1450 ACCGATGGGTGCCTTGAGTTCATGAGCAATGTTAGCTTTAACTCATCACTTTATTGTAGG 1509 ||| ||||| || || || || |||| |||||||| |||||||||||| || || || Sbjct 1055 ACCTATGGGAGCTTTAAGCTCCTGAGGAATGTTAGATTTAACTCATCATTTGATAGTTAA 996 Query 1510 TATGGCGGCAAACCGAGTTGGGAAACTTGGTTTTAACCACTATGCTTTACTTGGTGATGA 1569 | || || | || | || ||| | |||| | | ||| | || | || ||||| Sbjct 995 ATTTGCAGCCTATCGTTTAGGTAAAAATTCTTTTGATAATTATATTATATTGGGAGATGA 936 Query 1570 TATAGTTATTGCTGACAAATCTGTAGCAGATTCCTATTATATGATCATGACTGAA 1624 | | || || ||||| | |||| || ||| |||| | || |||||| || Sbjct 935 TGTTGTAATAGCTGATGAGGCTGTTGCGACTTCATATTTCAATATAATGACTAAA 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8265593325528