Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_030747.1 Length=2506 Score E Sequences producing significant alignments: (Bits) Value seq74 167 4e-38 seq75 93.3 7e-16 >seq74 Length=1504 Score = 167 bits (184), Expect = 4e-38 Identities = 218/299 (73%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 1236 GGTCAACCTATGGGTTCATATTCTTCCTGAGCTGCCTTTACACTTACACACCATTTAGTT 1295 ||||||||||||||| | || ||| ||||| || |||| ||||| || ||| || | Sbjct 343 GGTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCTATGT 284 Query 1296 TTACACTGATGTGCAAAATTAAATGGTA--TAGATA--ATTTTTCAGAT--TATATAATT 1349 | |||||||||||| | ||| | ||| | ||| || ||||| | ||||| ||| Sbjct 283 GTGCACTGATGTGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATATGATT 224 Query 1350 CTTGGTGATGATATCGTTATAAAAAATGATAAAGTCGCAAGAACTTACATAAAATGAATG 1409 | || |||||||| || || || ||||||||||| || | ||| | | || |||| Sbjct 223 TTGGGAGATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATTAATG 164 Query 1410 GATTATCTAGGTGTGGAATTATCTGATAGTAAAACACATGTATCGAAAGATACATATGAA 1469 | | || ||||| || | |||| || ||||| ||||||||| |||||| |||||| Sbjct 163 AGTAAACTTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTATGAA 104 Query 1470 TTTGCTAAAAGATGATTCTGTAAAGGAAAAGAATTTACTGGATTACCAATGAATGGAAT 1528 ||||||||||||||| |||| || || || |||||||||||||| | |||||| Sbjct 103 TTTGCTAAAAGATGAATCTGCGCCGGTAAGGAGATTACTGGATTACCACTTGGTGGAAT 45 >seq75 Length=1460 Score = 93.3 bits (102), Expect = 7e-16 Identities = 174/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 1236 GGTCAACCTATGGGTTCATATTCTTCCTGAGCTGCCTTTACACTTACACACCATTTAGTT 1295 |||||||| ||||| | ||| | || ||||| || ||| | | |||||| | || Sbjct 480 GGTCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGTA 539 Query 1296 TTACACTGATGTGCAAAATTAAATGGTATAGATAATTTTTCAGATTATATAATTCTTGGT 1355 | |||| |||||| || ||| ||||||||||| ||||||||||||| | ||| Sbjct 540 ATTGCCTGAGCCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGGT 599 Query 1356 GATGATATCGTTATAAAAAATGATAAAGTCGCAAGAACTTACATAAAATGAATG-GATTA 1414 || ||| | || |||||| | ||||||| || || || |||| | |||| | | Sbjct 600 GACGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAGTATATAACTTTAATGACAAGA 659 Query 1415 TCTAGGTGTGGAATTATCTGATAGTAAAACACATGTATCGAAAGATACATATGAATTTGC 1474 | ||| || || | ||| | || |||||||| ||| |||||||||||||| Sbjct 660 T-GAGGAGTTGAGATCTCTCCAACAAAGACACATGTTAGTAAAACAACATATGAATTTGC 718 Query 1475 TAAAAGATGATTC 1487 || |||||| || Sbjct 719 GAAGAGATGAATC 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910393612352