Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_030861.1 Length=2397 Score E Sequences producing significant alignments: (Bits) Value seq75 127 3e-26 seq74 113 7e-22 >seq75 Length=1460 Score = 127 bits (140), Expect = 3e-26 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 1224 TGGACAGCCTATGGGAACATACTCAAGTTGAGTATCATTCACATTGGCTCACCATTTAGT 1283 ||| || || |||||| | || ||||||| | | |||||||||||||||||| | || Sbjct 479 TGGTCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCACCATCTTGT 538 Query 1284 TGTGCACTGATGTGCAAAACTAGAAGGAGTTAAAGATTTTGATCAGTATATAATCCTAGG 1343 | |||| ||||||||| || | | ||||| | | |||||||| |||| Sbjct 539 AATTGCCTGAGCCGCAAAACTATGCGGTTTAGATAATTTTAAAGATTATATAATTTTAGG 598 Query 1344 TGATGATATTGTAATAAAACACAATAAAATTGC-CAAAAGATATATAAAGATCATGGAGA 1402 ||| ||| |||| ||||||||||||||| |||| |||||| ||||||| | ||| | Sbjct 599 TGACGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAG-TATATAACTTTAATGACAA 657 Query 1403 AACTAGGTGTCGAATTATCTCTTGCAAAAACACATGTATCTGAAGATACTTATGAATTTG 1462 | ||| || || | |||| |||| |||||||| | || || |||||||||| Sbjct 658 GATGAGGAGTTGAGATCTCTCCAACAAAGACACATGTTAGTAAAACAACATATGAATTTG 717 Query 1463 CGAAAAGATGATTC 1476 |||| |||||| || Sbjct 718 CGAAGAGATGAATC 731 >seq74 Length=1504 Score = 113 bits (124), Expect = 7e-22 Identities = 183/262 (70%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 1221 TGCTGGACAGCCTATGGGAACATACTCAAGTTGAGTATCATTCACATTGGCTCACCATTT 1280 || ||| || |||||||| | ||||| ||||||| | |||| | | |||| ||| | Sbjct 347 TGTTGGTCAACCTATGGGTGCTTACTCTAGTTGAGCAGCATTTAGCCTTACTCATCATCT 288 Query 1281 AGTTGTGCACTGATGTGCAAAACTAGAAGGAG-TTAAAGA-----TTTTGATCAGTATAT 1334 | |||||||||||||||| | ||||||| || || | ||| | | ||||| Sbjct 287 ATGTGTGCACTGATGTGCATACTTAGAAGGTTATTCAATAGGATCTTTCAAAAACTATAT 228 Query 1335 AATCCTAGGTGATGATATTGTAATAAAACACAATAAAATTGCCAAAAGATATATAAAGAT 1394 || | || |||||||||||||| || | ||||| | | ||||| | | | Sbjct 227 GATTTTGGGAGATGATATTGTAATTAACAATGATAAAGTATCATCTAGATACTTTACATT 168 Query 1395 CATGGAGAAACTAGGTGTCGAATTATCTCTTGCAAAAACACATGTATCTGAAGATACTTA 1454 ||| ||||| ||||| || | ||| || ||||| |||||||| ||||||||| Sbjct 167 AATGAGTAAACTTGGTGTAGATATTTCTGTTAACAAAACTCATGTATCGTTAGATACTTA 108 Query 1455 TGAATTTGCGAAAAGATGATTC 1476 ||||||||| ||||||||| || Sbjct 107 TGAATTTGCTAAAAGATGAATC 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7561593894008