Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_030862.1 Length=2414 Score E Sequences producing significant alignments: (Bits) Value seq75 96.9 5e-17 >seq75 Length=1460 Score = 96.9 bits (106), Expect = 5e-17 Identities = 199/290 (69%), Gaps = 17/290 (6%) Strand=Plus/Plus Query 1206 TATGCAGTTGGACAACCAATGGGGGCATATAGCTCGTGAGCAGCATTCACA----CTTAC 1261 ||| ||||||| ||||||||||| || |||| || || || |||||| || || Sbjct 471 TATTCAGTTGGTCAACCAATGGGAGCTTATACAAGTTGGGCTGCGTTCACATTGGCTCAC 530 Query 1262 ACATCATTTAACCGTTGCCTGATCTGCTTA-CAAAGCAAGAAAGACTATGGGATTTGACC 1320 |||| | ||| |||||||| | || | | | || ||| || ||| | Sbjct 531 -CATCTTGTAA---TTGCCTGAGCCGCAAAACTATGCGGTTTAGATAAT----TTTAAAG 582 Query 1321 AATATATAATATTAGGTGATGATATTGTCATAAAAGACAATAGAATTGCCGAAATATATA 1380 | |||||||| |||||||| ||| |||| |||||| |||||| | |||| ||| |||| Sbjct 583 ATTATATAATTTTAGGTGACGATGTTGTGATAAAACACAATAAAGTTGCTCAAAAGTATA 642 Query 1381 AAGGTCAGATGATGAGAATGGGTGTGGACATATCTCTACCAAAAACACACGTGTCCGTAG 1440 | | |||| ||| || || || || |||| | |||| ||||| ||| ||| Sbjct 643 TAACTTTAATGACAAGATGAGGAGTTGAGATCTCTCCAACAAAGACACA--TGTTAGTAA 700 Query 1441 AT--ACGTATGAATTTGCAAAGAGATGAATCAAGAAGGACAGAGAGATTA 1488 | || ||||||||||| |||||||||||| | || | | ||||||| Sbjct 701 AACAACATATGAATTTGCGAAGAGATGAATCCAAAACAATCGTGAGATTA 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7615993850080