Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_030654.1 Length=8246 Score E Sequences producing significant alignments: (Bits) Value seq1039 116 2e-22 >seq1039 Length=2337 Score = 116 bits (128), Expect = 2e-22 Identities = 312/467 (67%), Gaps = 15/467 (3%) Strand=Plus/Minus Query 5388 CCTTCAACATACCTACACTGCCGCGCCTCCCCCGATGATGT---TTCCAAGTGGTACAAA 5444 || || || |||||||||||||||||||| ||| ||| | |||| ||||| ||| Sbjct 1426 CCGTCCACTTACCTACACTGCCGCGCCTCACCCACTGAGATGAGTTCC---TGGTATAAA 1370 Query 5445 GAGCATTGGCAACCTGGC---CCCATGATTGGCAATGATTACACTGCTTGGGATTCCGGT 5501 ||||| ||| |||| ||| | ||||| | ||| || |||||||||||||| ||||| Sbjct 1369 GAGCACTGGAAACCGGGCGAGCGCATGACCGCCAACGACTACACTGCTTGGGACTCCGGA 1310 Query 5502 GTTGACAAAGTGTTCCTCGAGTTCGATCTGTGGCTCATGTCCTTGTGCCACTTTCCCACG 5561 |||| ||||||| | || |||||| | ||| | ||| | ||| | || | Sbjct 1309 TGTGACCGAGTGTTCTTAGACTTCGATGTCTGGATAATGGGGCTATGCGGTATCCCAAAT 1250 Query 5562 CCGTATATCGAGAAGCTCCGCTTCGAGC-GTCT-CAACACATACTCCCACCTTGGCACCC 5619 ||||||| | || | || | | || |||| || ||| || || | | Sbjct 1249 GAGTATATCAATCGTTACCAACTTGATCGGGCTACAAC-CA-CCTCATACGCCGGGCCAC 1192 Query 5620 ACATGCCCCGGCAGGAGAGTGGGGATCGCTGGACCTGGATCCTCAATACCGCCCGCAATG 5679 ||||| || |||||| || ||||| ||||||||| | || || ||| |||||||| Sbjct 1191 ACATGATACGTCAGGAGTCCGGTGATCGTTGGACCTGGTTGCTTAACACCCTCCGCAATG 1132 Query 5680 CTGCCCTGACCGGCGCCAGTTTGGATTTCCCACCGCGCACTCCTGCTTGCTTCAGCGGGG 5739 ||||| | || ||| |||| | |||||| | ||||| |||| || | Sbjct 1131 CTGCCATCACTGGCATATCTTTGCGGTGCCCACCTTCTTCCCCTGCCGCCTTCTCGGGCG 1072 Query 5740 ATGATGGCGTTGTTCTGGGCACTTGGCGCCGCACCACTGGCTTTTCA-CCGGACGATTGG 5798 ||||| | |||||||| || ||||| || || || ||| | ||| || ||| Sbjct 1071 ATGATAGTGTTGTTCTCGGTGACTGGCG-GGCCCCTAAGGAATTTAACCCGCGGGACTGG 1013 Query 5799 CTGATGAAGCCCAAGATGGAGCGCGGTTCCAGACTCGAGTTCTGTGG 5845 ||| |||||||| ||| || |||| |||||||||||||| Sbjct 1012 ACAATGCAGCCCAAGCCTGAGTTTGGCACCAGCCTCGAGTTCTGTGG 966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26271146422720