Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001564.2 Length=10682 Score E Sequences producing significant alignments: (Bits) Value seq80 578 3e-161 seq100 233 1e-57 seq3825 104 2e-18 >seq80 Length=2772702 Score = 578 bits (640), Expect = 3e-161 Identities = 334/342 (98%), Gaps = 1/342 (0%) Strand=Plus/Plus Query 3914 GCCCTGTCTCTCGCTACCGTTGTGTCTCTGATCTTCAGTTTGAACGCTATGTACAAGTAC 3973 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 114726 GCCCTGTCTCTCGCTACCGTTGTGTTTCTGATCTTCAGTTTGAACGCTATGTACAAGTAC 114785 Query 3974 GCATGTCAATATCACAATCCGAGGAACGGCTACAGAGACTCTGGCGCGAATTTATGGTTT 4033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114786 GCATGTCAATATCACAATCCGAGGAACGGCTACAGAGACTCTGGCGCGAATTTATGGTTT 114845 Query 4034 TGGACTGTATCCTTGGCGAGCGCTGGGGGAATCTGGGCGGCGGAGAAAGCTCACCAACCA 4093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114846 TGGACTGTATCCTTGGCGAGCGCTGGGGGAATCTGGGCGGCGGAGAAAGCTCACCAACCA 114905 Query 4094 ACGGTGGCAGCTGTCCTAGCCTTTACAATGATAGTGCTCTTTCTTTACATGGAACAGACG 4153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 114906 ACGGTGGCAGCTGTCCTAGCCTTTACAATGATAGTGCTCTTTCTTTACATGGAACAAACG 114965 Query 4154 AACGTCAGTATGGAGCTTGAGTTCATCTCAGCTGGAGAGACTCCCGAAGGAGTGTCAACC 4213 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114966 AGCGTTAGTATGGAGCTTGAGTTCATCTCAGCTGGAGAGACTCCCGAAGGAGTGTCAACC 115025 Query 4214 GAAAATGATGACGGGATGAATATTCCTGACTTAAAAG-GGCG 4254 ||| ||||||||||||| | ||||||||||||||||| |||| Sbjct 115026 GAATATGATGACGGGATAAGTATTCCTGACTTAAAAGTGGCG 115067 Score = 309 bits (342), Expect = 2e-80 Identities = 182/189 (96%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 8549 GTCAACAGGACGATTACAAAGCATTTTATCCGGTTCTTCAAGAATCGCAACTTACGACCG 8608 |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 114517 GTCAACAGGACGATCATGAAGCATTTTATCCGGTTCTTTAAGAATCGCAACTTACGACCG 114458 Query 8609 CGTATTTTATCAAAAGAAGAATTCATCGCCAACGTTCGAAATGATGCGGCTGTAGGATCG 8668 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 114457 CGTATTTTATCAAAAGAAGAATTCATCGCCAACGTTCGAAATGATGCGGCTATAGGATCG 114398 Query 8669 TGGAGCAGGGATGTGCCATGGCGAGATGTGCAAGAAGCCATACAGGACCAGTGCTTCTGG 8728 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 114397 TGGAGCAGGGATGTGCCATGGCGAGATGTGCAAGAAGCCATTCAGGACCAGTGCTTCTGG 114338 Query 8729 GATCTCATC 8737 |||| |||| Sbjct 114337 GATCCCATC 114329 Score = 300 bits (332), Expect = 1e-77 Identities = 174/178 (98%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 7311 TTCTCCATCCCCGGTCAAAGATCCATGATGTCATGGATTTTGGCTCCATGGTGTCTGCCA 7370 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114680 TTCTCCATTCCCGGTCAAAGATCCATGATGTCATGGATTTTGGCTCCATGGTGTCTGCCA 114621 Query 7371 TAGGGTTGCTAGAAATGAACTACCTTTTTTATAGGTTCATGCACATTGCCGCTAGAGCCT 7430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114620 TAGGGTTGCTAGAAATGAACTACCTTTTTTATAGGTTCATGCACATTGCCGCTAGAGCCT 114561 Query 7431 TGGGCGCGGTAGCTCCCTTCAACCAGTTTCGAGCTCTGGAAAAGTCAACA--ACGATC 7486 ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 114560 TGGGCGCGGTAGCCCCCTTCAACCAGTTTCGAGCTCTGGAAAAGTCAACAGGACGATC 114503 Score = 98.7 bits (108), Expect = 7e-17 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 6313 GAATGGAGAACTGCGTGACCGGTCCACAACTGAGCGCTCCCTTACCGTGCTAATGGC 6369 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 114671 GAATGGAGAACTGCGTGACCGGTCTACAACTGAGCGCTCCCTTACCGTGCTAATGGC 114727 >seq100 Length=1779872 Score = 233 bits (258), Expect = 1e-57 Identities = 693/1051 (66%), Gaps = 46/1051 (4%) Strand=Plus/Plus Query 8303 ACATGGTTTGAAGATCAACAACA-CCCCTACAAGAGTTTCAAGTATTTTGGATCGTTTGT 8361 || |||||| || ||| |||| ||||||| ||| ||| ||||| ||| |||| || Sbjct 212023 ACTTGGTTTTTTGA-CAAGAACAACCCCTACCAGACTTTTAAGTACCATGGTTCGTACGT 212081 Query 8362 CACCGATGATGTGAAGGTAGGAGGGCAAGCGGTGAACCCCCTCGTTAGGAAGATCATGTG 8421 || ||||| || || || || || ||| | || ||||| || || ||||||| ||||| Sbjct 212082 GACAGATGACGTCAAAGTTGGTGGTCAAACTGTCAACCCTCTTGTCCGGAAGATTATGTG 212141 Query 8422 GCCATGGGAGACTCTCACGAGTGTGGTGGGGTT------TTCC--ATGACTGACGTGTCA 8473 ||| ||||| | | ||| || || ||| ||||| ||| | ||| Sbjct 212142 GCCTTGGGAAGCCGT--------TGGAGGAGTAACAAACTTCATGATGACCGACATCTCA 212193 Query 8474 ACCTACTCACAGCAGAAGGTACTGAGGGAGAAGGTGGACACTGTCATCCCTC--CCCACC 8531 || ||||| || || ||||| || |||||||||| | ||| | ||||| |||| Sbjct 212194 ACGTACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCCCCGTCCCTGAACCCAGG 212253 Query 8532 CA-CAGCATATACGGCGGGTCAACAGGACGATTACAAAGCATTTTATCCGGTTCTTCAA- 8589 | ||| || | | ||||| |||| || | ||||| | |||| | ||||| Sbjct 212254 GAACAGGTTAAAATG---GTCAATAGGAAAATCATGAAGCACATGGTCCGCCTGTTCAAA 212310 Query 8590 GAATCGCAACTTACGACCGCGTATTTTATCAAAAGAAGAATTCATCGCCAACGTTCGAAA 8649 ||| || | |||||| ||||| | || || |||||| || || ||| Sbjct 212311 GAAAAAGGGCTGAA-ACCGCGGATTTTGACGTGTGACGACTTCATCAAGAATGTCCGATC 212369 Query 8650 TGATGCGGCTGTAGGATCGTGGAGCAGGGATGTGCCATGG--CGAGATGTGCAAGAAGCC 8707 ||||| || | || || |||||| || || || ||| | || || || ||| Sbjct 212370 GGATGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAAGGTGACCACT--GCC 212427 Query 8708 ATACAGGACCAGTGCTTCTGGGATCTCATCGGAAA---GGAACGGGCCCTCCATCTGCAA 8764 | | |||| | || ||||| || | ||| |||| | ||||| ||| Sbjct 212428 GTCAATGACCCCCGGTTTTGGGAACTAGT---AAACCGGGAAAGAAAACTCCACCTGGCC 212484 Query 8765 GGGAAGTGTGAAATGTGTATCTACAACACCATGGGCAAGAAGGAGAAAAAGCCCAGCCTA 8824 ||| | |||| ||||| | |||||||||||||| || || ||||| | || | | || Sbjct 212485 GGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATA 212544 Query 8825 GCTGGTGAGGCCAAGGGCTCAAGGACCATCTGGTACATGTGGCTTGGGAGCCGGTTCCTT 8884 ||||| ||| | || || || ||||||| |||| |||||||| || || || | || Sbjct 212545 GCTGGGGAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCTG 212604 Query 8885 GAATTTGAGGCTCTAGGCTTTCTTAATGCGGATCACTGGGTCAGTAGGGAGCACTTCCCT 8944 |||| |||||| | ||||| || || | || || ||||| | || | ||||| Sbjct 212605 GAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCCG 212664 Query 8945 GGGGGAGTTGGAGGCGTTGGTGTCAATTATTTCGGGTACTACTTGAAGGACATTGCCAGC 9004 || || || ||||| | || || || || || || || |||||| || || || Sbjct 212665 GGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTTCA 212724 Query 9005 AGAGGAAAATACCTTTTC---GCGGACGACATTGCTGGATGGGACACAAAAATTAGCGCG 9061 | |||||| | ||||| || || ||||| ||||| |||||||| ||||| | Sbjct 212725 AAAGGAAAGT---TTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAG 212781 Query 9062 GAGGATCTGGAGGATGAGGAAGCTCTCCTAACAGCCCTC-ACGGAAGACCCCCACCACAG 9120 | |||| ||| || || | || ||| | | ||| | || || |||| || Sbjct 212782 GCGGATTTGGCCGACGAAG-AGTTCTTCATCCTCAACTCGATTGAGGATGATTACCATAG 212840 Query 9121 AGCGTTGATGGCGGCTACCATGCGACTGGCATATCAGAACATTGTGGCCATGTTCCCACG 9180 ||| || || | | |||| | | || || || || ||||||||| |||| || || Sbjct 212841 AGCTCTGGCGGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTCCCCG 212900 Query 9181 AACACACTCAAAATACGGCAGCGGCACGGTGATGGACGTCGTTGGCCGTCGGGACCAACG 9240 ||| || || ||| ||| || || ||||| ||||| || ||| ||| ||| || || Sbjct 212901 AACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCGGATCAGCG 212960 Query 9241 TGGGTCAGGGCAAGTAGTCACATATGCGCTGAACACCATAACAAATGGTAAGGTTCAG-G 9299 || || ||||| || || |||||||| ||||||| || || ||||| ||||||||| Sbjct 212961 AGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAAGGTTCAGAT 213020 Query 9300 TGGCGAGGGTTTTAGAAAGTGAAGGACTACT 9330 |||| | || ||||||||||| ||||| Sbjct 213021 TGGCCAAACCCTT-GAAAGTGAAGGGCTACT 213050 >seq3825 Length=1042611 Score = 104 bits (114), Expect = 2e-18 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 9698 GCCCAGATGTGGGCATTGTATTTTTTCCACAGGCGTGATTTACGCCTAGGTTTCATTGCC 9757 || ||||||||||| ||||| || |||||||| | || || | |||| ||| ||| Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9758 ATCTCGTCGGCTGTGCCAACCAATTGGTTCCCTCTAGGACGTACCTCGTGGTCAGTCCAC 9817 ||| | || ||| || | ||||||||| ||| || || |||||||| | || Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCAT 957569 Query 9818 CAGCATCACGAATGGATGACCACTGATGACATGCTTCGGGTTTGGAATGACGTGTGGGTG 9877 || | ||||||||||| || || |||||||| || |||||| ||| ||| | Sbjct 957570 CAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGATC 957629 Query 9878 CACAACAACCCGTGGATTCTAAACAAGGAGTCAATTGAATCCTGGGATGACATCCCCTAC 9937 || ||||||| ||||| | | || || | | ||| ||||| || ||||||| Sbjct 957630 CAAGACAACCCATGGATGAAACATAAAGAATGGGTCGAAAAGTGGGAGGATCTCCCCTAT 957689 Query 9938 CTGCACAAGAAA 9949 || ||||||||| Sbjct 957690 CTCCACAAGAAA 957701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34065376851208