Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq58 132 3e-27 >seq58 Length=3045158 Score = 132 bits (146), Expect = 3e-27 Identities = 394/593 (66%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 6240 AAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGG 6299 || || |||||| | ||| |||||||||||| | ||||| ||||| | | | Sbjct 2382472 AAGGAGAGAGAGATCAAGGAGAAGGGGAGATTCTTTGCCATGATGGCATGGGAGCTACGA 2382531 Query 6300 GAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTT-CAAGGG 6358 ||||| || || | || || | || |||||||| |||| ||||||| | || || ||| Sbjct 2382532 GAGTATTTCGTGGTGACCGAACACCTCATCAAGACCCATTTTGTTCCGTTATTTCACGGG 2382591 Query 6359 ATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGG 6418 ||| ||||||||||||| | | |||||| | |||| ||| | || || | | Sbjct 2382592 CTTA-CGATGGCCGACGACCACAACTCTGTCATCGAGAAAATGCTTC-TAGCATCAGACG 2382649 Query 6419 GCAAGGCTTG-GACGACTACTCATCTATATGCATTGCG--AACCACATTGATTATGAAAA 6475 || | || ||| | || | | | | | || || ||| | |||||| ||| Sbjct 2382650 CTCAGAATCCAGATGAC--CCCAGCCAAGTAAACTACGCTAATCACTTGGATTATTCAAA 2382707 Query 6476 ATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATT 6535 ||||||||| || || || || | || | || ||||| || |||||||| ||||| Sbjct 2382708 ATGGAACAACCACCAGCGCGGCGAGGCTAACGATCCAGTATTCCGGGTCATGGGGCAATT 2382767 Query 6536 CTTAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAGTCAAGT--CTCATT 6593 | | || ||| || || | | |||||||| || ||| | ||||| || || Sbjct 2382768 CCTGGGCCTCCCAAATCTTTTGGTGCGAACACATGAGTTTTTT--GGCAAGTCCCTGATA 2382825 Query 6594 TATTATAACGGGAGGCCGGACCTGATG-GATGTGAGAGGGGATTCTTTAGTGAATACAAC 6652 || || || | ||||||| ||||| || ||| | ||| | | |||| | || Sbjct 2382826 TACTACAAGGACCGGCCGGATTTGATGCGAGTTGAAAACGGA-ACGGTGGTGACCTCGAC 2382884 Query 6653 AGATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTTCGCAGAAAGG 6712 ||| |||| || |||||| |||| || ||||||| |||||||||| ||||| || Sbjct 2382885 AGAGGAGATGGTATGCTGGAAAGGCCAGCCAGGCGGCCTAGAAGGGCTCCGACAGAAGGG 2382944 Query 6713 ATGGAGTGTACTCAATTTACTGGTCATCAATCGAGAATCATCTATCAGAAACACAGTTGT 6772 |||||||| | || | || | || | ||| || | ||| ||||||| | | Sbjct 2382945 GTGGAGTGTGGTGAACTATCTCGGGATAGAACGACAAGCTAAAATCCGAAACAC-GCAGG 2383003 Query 6773 AAAGGTG-CTGGCTCAGGGGGACAATCAGGTGATCTGCACGCAGTATAAAACC 6824 ||||| || ||||||||||| || ||| | |||||||| ||| |||||| Sbjct 2383004 TCAGGTGTCTTGCTCAGGGGGATAACCAGATAATCTGCACATTGTACAAAACC 2383056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35143719139284