Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_008604.2 Length=10837 Score E Sequences producing significant alignments: (Bits) Value seq100 149 4e-32 seq3825 109 4e-20 >seq100 Length=1779872 Score = 149 bits (164), Expect = 4e-32 Identities = 387/584 (66%), Gaps = 6/584 (1%) Strand=Plus/Plus Query 8807 CACCTGCGTGGAGATTGTGAGTTGTGCGTGTTCAACACAATGGGCAAGAAGGAGAAGAAG 8866 |||||| || || |||| | ||||||||| |||||| ||||| || || |||||| | Sbjct 212476 CACCTGGCCGGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAA 212535 Query 8867 CCGTCCTCTTTCGGCGAGGCACGAGGATCAAGGATTATCTGGTACATGTGGCTCGGAAGT 8926 ||| || || ||| | |||||| ||| || |||| |||||||| |||||| Sbjct 212536 CCGACCATAGCTGGGGAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGT 212595 Query 8927 CGGTTTTTGGAGTACGAAGCACTTGGATTCCTAAACGAGGACCATTGGGTAGCGAGGAAG 8986 || | | |||| || || || | || ||||| ||||| |||||||||||||| | | Sbjct 212596 CGATATCTGGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAA 212655 Query 8987 AACTTTCCGTGCGGAGTTGGCGGGGTCGGAGTGAATTACTTTGGATACTATCTCCAGGAA 9046 || || ||| |||| || || || |||| || || |||||||| || || | ||| Sbjct 212656 AATTTCCCGGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAA 212715 Query 9047 ATCATGCAAAAAGGTAAGTGGATGATTGCTGATGACACCGCCGGTGGGGACACGCGCATA 9106 || |||||| |||| | |||| ||||||| || || ||||||| ||||| Sbjct 212716 ATAGCTTCAAAAGGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATT 212775 Query 9107 ACTGAAGCTGACCTGGAGGACGAGTTGTGGTTCCTGCTGGAC-CAAGTGACTGACCCCTA 9165 | | | || || ||| ||||| || ||| | || || | | ||| || || Sbjct 212776 AGTCAGGCGGATTTGGCCGACGAAGAGTTCTTCATCCTCAACTCGATTGA-GGATGATTA 212834 Query 9166 CCACGCACAGTTGATAC-GTGT-TGTGTTCAAGTTCTGCTACATGAACATGGTCGCCTTG 9223 ||| | || | | | || || | || || |||| || || || ||| || Sbjct 212835 CCA--TAGAGCTCTGGCGGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTG 212892 Query 9224 TTTCCAAGGAACCATCCGCAGTTCCGGAGCGGGACAGTTTTTGACGTTGTTTCACGCACA 9283 ||||| | | |||| | | ||| |||| || || || | || || ||||| || | Sbjct 212893 TTTCCCCGAACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCG 212952 Query 9284 GACCAACGCGGCTCTGGGCAAGTGACCACCTACGCTCTCAACACCGTGACGAATGGGAAG 9343 || || || ||||| ||||| ||| || || || | ||||| | || ||||| ||| Sbjct 212953 GATCAGCGAGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAAG 213012 Query 9344 AACCAGGTTGGGAGAATGCTGGAGGCTGAAGGGCTACTGGACGC 9387 ||| |||| || || || |||||||||||| || || Sbjct 213013 GTTCAGATTGGCCAAACCCTTGAAAGTGAAGGGCTACTCGAAGC 213056 Score = 86.0 bits (94), Expect = 4e-13 Identities = 223/339 (66%), Gaps = 11/339 (3%) Strand=Plus/Plus Query 9580 CTGGGAACATGTTGAATTCTGTTCCCATCACTACCATCCTCTCGTGCTGCAAGACGGTCG 9639 |||||| | ||||| || || |||||||||| |||||| ||| || |||| || | Sbjct 244189 CTGGGAGCGCGTTGAGTTTTGCTCCCATCACTTCCATCCACTCCATCTCAAAGATGGAAG 244248 Query 9640 TGAGATCATTGCTCCGTGTCGTGACCAACACGAGATCATTGGCCGAGCACGGATCCAGAA 9699 | || || | ||| || || || | ||||| |||||||| || || |||| || Sbjct 244249 GAAAATAATCGTTCCATGCCGCCACGAGCACGAAATCATTGGGAGAAGTCGAGTCCAAAA 244308 Query 9700 AGGGGGGATCGTGGACATGTCAGCTGCCGGGTGCTTAGCAAAGGCACATGCCCAAATGTG 9759 ||| ||| ||||| ||| ||| | || | |||| || || | |||||||| Sbjct 244309 AGGAGGGCTCGTGACCATCCCAGAAAGTGCTTGTCTGTCAAAAGCCCACGGACAAATGTG 244368 Query 9760 GGCATTGTACTACTTCCACCGGAGGGACTTGCGGCTCGGATTTGCCGCTAT-CACGTCGG 9818 ||| |||||| ||||| ||| | || ||||| | || | || || || || | | Sbjct 244369 GGCTCTGTACTTTTTCCATCGGCGTGATCTGCGGGTGGGGTACGCAGCCATACATG-CAT 244427 Query 9819 CCGTCCCGGTGAACTGGATCCCCACGGGGCGGATATCGTGGTCAGTCCACCAACACGCTG 9878 |||| || | ||| |||| ||| | |||| ||||||| || | Sbjct 244428 CCGTTCCAACAGATTGGGTCCCAGAGGG---------GAGGTCCATCCACCAGCAATACG 244478 Query 9879 AATGGATGACGACACAGGACATGCTAGAAGTGTGGAACA 9917 | |||||||| || | ||||||| || |||||||||| Sbjct 244479 AGTGGATGACCACGGAAAACATGCTTGATGTGTGGAACA 244517 >seq3825 Length=1042611 Score = 109 bits (120), Expect = 4e-20 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 9749 GCCCAAATGTGGGCATTGTACTACTTCCACCGGAGGGACTTGCGGCTCGGATTTGCCGCT 9808 || || |||||||| ||||||| ||||||| | || |||||| || | ||||| || || Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9809 ATCACGTCGGCCGTCCCGGTGAACTGGATCCCCACGGGGCGGATATCGTGGTCAGTCCAC 9868 ||| | || || || ||| | ||| |||| || || | |||||||| | || Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCAT 957569 Query 9869 CAACACGCTGAATGGATGACGACACAGGACATGCTAGAAGTGTGGAACACCGTGTGGATT 9928 ||| || |||||||||||| ||| |||||||||| || ||||| ||| ||||| Sbjct 957570 CAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGATC 957629 Query 9929 GTCAACAACCCATGGATG 9946 |||||||||||||| Sbjct 957630 CAAGACAACCCATGGATG 957647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34561350307148