Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_009942.1 Length=11029 Score E Sequences producing significant alignments: (Bits) Value seq3825 82.4 5e-12 >seq3825 Length=1042611 Score = 82.4 bits (90), Expect = 5e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 9970 GCCCAGATGTGGCTGCTTCTGTACTTC---CACAGAAGAGACCTGCGGCTCATGGCCAAC 10026 || ||||||||| |||| |||||||| |||||||||||| || || | | Sbjct 957450 GCGCAGATGTGG--GCTT-TGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCG 957506 Query 10027 GCCATTTGCTCCGCTGTCCCTGTGAATTGGGTCCCTACCGGAAGAACCACGTGGTCCATC 10086 ||||| || ||| |||||| | ||| ||||| || |||| |||||||||| Sbjct 957507 GCCATCGCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATT 957566 Query 10087 CATGCAGGAGGAGAGTGGATGACAACAGAGGACATGTTGGAGGTCTGGAACCGTGTTTGG 10146 ||| | | || ||||||||||||||||||||| | || ||||| || |||||| Sbjct 957567 CATCAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGG 957626 Query 10147 ATAGAGGAGAATGAATGGATGGAAGACAAA 10176 || | || || ||||||| || | ||| Sbjct 957627 ATCCAAGACAACCCATGGATGAAACATAAA 957656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35175717426764