Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_012671.1 Length=10865 Score E Sequences producing significant alignments: (Bits) Value seq100 143 2e-30 seq3825 95.1 8e-16 >seq100 Length=1779872 Score = 143 bits (158), Expect = 2e-30 Identities = 503/776 (65%), Gaps = 16/776 (2%) Strand=Plus/Plus Query 8342 CTACGGAATGAAAATCTGCACACCTGGTTTGTTGATCGTGAACATCCT-TACCAGTCCTT 8400 || ||| |||||||||| ||| |||||| |||| | ||||| || |||||| | || Sbjct 212002 CTCCGGGATGAAAATCTAAGCACTTGGTTTTTTGA-CAAGAACAACCCCTACCAGACTTT 212060 Query 8401 CAACTACCACGGATCATTCGCCACTGACGACATTTCCCCCGGTGGGCAAACGGTGAATCC 8460 || ||||| || || | || || || ||| | ||||| ||||| || || || Sbjct 212061 TAAGTACCATGGTTCGTACGTGACAGATGACGTCAAAGTTGGTGGTCAAACTGTCAACCC 212120 Query 8461 TATGATGCGGCGCATCATGTGGCCGTGGGACTTTCTCACTCGTGTCACCACATTCATGAT 8520 | | | ||| || |||||||| ||||| | | || || | |||||||| Sbjct 212121 TCTTGTCCGGAAGATTATGTGGCCTTGGGAAGCCGTTGGAGGAGTAACAAACTTCATGAT 212180 Query 8521 GACGGACGTGTCTACGTATTCGCAGCAAAAGATCCTTAGGGAGAAGGTCGACACGCTAAC 8580 ||| ||| | || ||||| || || |||||| | || |||||||||| | ||| | | Sbjct 212181 GACCGACATCTCAACGTACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCC---C 212237 Query 8581 AGTCGAGCCGGACACACGCACGAGG-----AGCTTGAACCGGCTAATCATGAAACATTTT 8635 ||| | | || || | | ||| | | || || ||||||||| || | Sbjct 212238 CGTCC--CTGAACCCAGGGAACAGGTTAAAATGGTCAATAGGAAAATCATGAAGCACATG 212295 Query 8636 TCACGCCTGTTCAAGAAGCGAGGACTACGACCCCGAATCCTAGCTCCCTCTGACTACGTC 8695 ||||||||||| | ||| || ||| || || | | |||| | || Sbjct 212296 GTCCGCCTGTTCAAAGAAAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATC 212355 Query 8696 AACAATGTGAAGAGCGGA-GCCGCCGTTGGCGGCTGGAGCTCTGAGATGCCGTGGAACGG 8754 || ||||| || |||| || ||| |||| |||||| || | || |||| | Sbjct 212356 AAGAATGTCC-GATCGGATGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAA 212414 Query 8755 AGTCAAGGAGGCGCTAGACGACCCCGTGTTCTGGAGCTTGGTTGACCGAGAACGGGCGCT 8814 || | || | | |||||| ||| ||| | || |||| ||| | || Sbjct 212415 GGTGACCACTGCCGTCAATGACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACT 212474 Query 8815 GCACCTGAGTGGCGATTGTGAACTTTGTGTCTACAACACCATGGGAAAGAAAGAGAAGAA 8874 |||||| || || |||| | || || |||||||||||||| || ||||||||| | Sbjct 212475 CCACCTGGCCGGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCA 212534 Query 8875 ACC-TTCATCGTTTGGCGAGGCCCGTGGGTCTCGCATCATCTGGTACATGTGGTTGGGAA 8933 ||| ||| | ||| ||| | || || || | ||| |||| |||||| |||||| Sbjct 212535 ACCGACCATAG-CTGGGGAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAA 212593 Query 8934 GTAGGTTCCTCGAGTATGAAGCTCTCGGGTTTCTAAATGAAGATCACTGGGTTGCACGCG 8993 || | | || || ||||| || | || || || || ||||| || ||||| || || | Sbjct 212594 GTCGATATCTGGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTG 212653 Query 8994 AAAATTTTCCATGTGGTGTTGGAGGTGTGGGAGTGAACTACTTCGGGTACTACCTAAAGG 9053 ||||||| || | || || |||||| | || || |||||||| || || ||| | | Sbjct 212654 AAAATTTCCCGGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAG 212713 Query 9054 AAATCGCCCAAAAAGGGCAGTGGCTGATAGCTGACGATGTAGCCGGTTGGGACACT 9109 |||| || |||||| ||| | | || || || |||| || ||||||||| Sbjct 212714 AAATAGCTTCAAAAGGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACT 212769 Score = 125 bits (138), Expect = 5e-25 Identities = 238/349 (68%), Gaps = 11/349 (3%) Strand=Plus/Plus Query 9589 CTGGGAGCAAGTTGAGTTCTGTTCCCACCATTTCCACGCCTTGGTGCTTAGAGACGGACG 9648 |||||||| |||||||| || ||||| || ||||| | | || | ||| ||| | Sbjct 244189 CTGGGAGCGCGTTGAGTTTTGCTCCCATCACTTCCATCCACTCCATCTCAAAGATGGAAG 244248 Query 9649 AGAGATTATCGCTCCTTGCCGTGACCAACATGAAATCATTGGGAGAGCTCGGATCCAGAA 9708 | || |||| ||| ||||| || | || ||||||||||||||| ||| |||| || Sbjct 244249 GAAAATAATCGTTCCATGCCGCCACGAGCACGAAATCATTGGGAGAAGTCGAGTCCAAAA 244308 Query 9709 AGGAGGTGTGGTTGACATGTCAGCTGCCGGGTGCTTGGCCAAAGCTCACGCTCAAATGTG 9768 |||||| | || ||| ||| | || || | ||||| |||| |||||||| Sbjct 244309 AGGAGGGCTCGTGACCATCCCAGAAAGTGCTTGTCTGTCAAAAGCCCACGGACAAATGTG 244368 Query 9769 GGGGTTGTACTACTTCCACCGGCGAGACCTGCGGCTAGGATTCGCTGCAAT-CGTGTCGG 9827 || |||||| ||||| ||||| || |||||| | || | ||| || || | || | Sbjct 244369 GGCTCTGTACTTTTTCCATCGGCGTGATCTGCGGGTGGGGTACGCAGCCATACATG-CAT 244427 Query 9828 CTGTTCCCTCGAATTGGGTTCCAACGGGCCGCGTCTCATGGTCTGTGCACCAGCATGCTG 9887 | ||||| | ||||||| ||| ||| |||| | |||||||| | Sbjct 244428 CCGTTCCAACAGATTGGGTCCCAGAGGG---------GAGGTCCATCCACCAGCAATACG 244478 Query 9888 AGTGGATGACAACACAAGACATGCTGGAGGTATGGAACACCGTTTGGAT 9936 |||||||||| || || ||||||| || || ||||||| |||| ||| Sbjct 244479 AGTGGATGACCACGGAAAACATGCTTGATGTGTGGAACAGGGTTTAGAT 244527 >seq3825 Length=1042611 Score = 95.1 bits (104), Expect = 8e-16 Identities = 145/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 9758 GCTCAAATGTGGGGGTTGTACTACTTCCACCGGCGAGACCTGCGGCTAGGATTCGCTGCA 9817 || || ||||||| ||||||| ||||||| | ||||| || || |||||||||| || Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9818 ATCGTGTCGGCTGTTCCC-TCGAATTGGGTTCC---AACGGGCCGCGTCTCATGGTCTGT 9873 |||| || |||||| | |||| |||||| || ||||| || ||||| | Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAAT--GGTTCCCTGAA--GGCCGAACGTCGTGGTCCAT 957565 Query 9874 GCACCAGCATGCTGAGTGGATGACAACACAAGACATGCTGGAGGTATGGAACACCGTTTG 9933 || || | ||| |||||||||||| | |||||||| |||||||| |||||| Sbjct 957566 TCATCAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTG 957625 Query 9934 GATTGTGAACAACCCGTGGATGA 9956 ||| ||||||| ||||||| Sbjct 957626 GATCCAAGACAACCCATGGATGA 957648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34650945512092