Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_012932.1 Length=11064 Score E Sequences producing significant alignments: (Bits) Value seq100 239 3e-59 seq80 95.1 9e-16 seq2228 82.4 5e-12 >seq100 Length=1779872 Score = 239 bits (264), Expect = 3e-59 Identities = 666/1013 (66%), Gaps = 18/1013 (2%) Strand=Plus/Plus Query 8353 GTAACGGATGACGTAAAAGTCGGAGGACAGGCTGTGAACCCACTTGTACGGAAAATCATG 8412 || || |||||||| ||||| || || || |||| ||||| ||||| ||||| || ||| Sbjct 212080 GTGACAGATGACGTCAAAGTTGGTGGTCAAACTGTCAACCCTCTTGTCCGGAAGATTATG 212139 Query 8413 TGGCCCTGGGAGACCGTC--ACGAGTGTGGTCAGTTTTC-TCATGACCGATGTGTCAACC 8469 ||||| ||||| |||| | |||| || ||| | |||||||| | ||||| Sbjct 212140 TGGCCTTGGGAAGCCGTTGGAGGAGTAA---CAAACTTCATGATGACCGACATCTCAACG 212196 Query 8470 TATTCGCAACAAAAAATCTTGCGGGAAAAAGTTGATACCGTGATACCTCCTCACCCCCCG 8529 || || |||||||| | | ||||| || || | ||| | ||| | || | Sbjct 212197 TACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCCCCGTCCCTGAAC----CCAG 212252 Query 8530 CAAATACGT----ATGGTCAACAGCCTTATTACTAAGCATTTCATACGTATTTTCAAACG 8585 || | || |||||||| || || | ||||| | | || | |||||| Sbjct 212253 GGAACAGGTTAAAATGGTCAATAGGAAAATCATGAAGCACATGGTCCGCCTGTTCAAAGA 212312 Query 8586 CCGTGGTTTGACGCCCCGAATTATGACTAAAGAAGAATTCATCGCCAATGTTAGAAACGA 8645 || ||| || || ||| |||| || || |||||| ||||| || || Sbjct 212313 AAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATCAAGAATGTCCGATCGGA 212372 Query 8646 TGCAGCCATTGGTTCGTGGAGTCGGGACGTCCCCTGGAGGGACGTTCAAGCAGCCGTGCA 8705 ||| |||||||| || ||||| | |||||||| |||| | || | ||||| | Sbjct 212373 TGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAAGGTGACCACTGCCGTCAA 212432 Query 8706 AGACCAAGGTTTCTGGAATCTCGTTGGACACGAACGCGCTCTACATCTCCAAGGCAAATG 8765 |||| | || ||| | || || | ||| | || || || || | || Sbjct 212433 TGACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACTCCACCTGGCCGGGGACTG 212492 Query 8766 CTCCATGTGTTTATATAACACGATGGGTAAGAAAGAAAAGAAGCCAAGCGTAGCCGGCGA 8825 | ||||| | || ||||| ||||| || ||||| ||| | || | | |||| || || Sbjct 212493 TGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATAGCTGGGGA 212552 Query 8826 GGCAAAAGGATCGAGAACTATCTGGTACATGTGGCTCGGAAGTCGTTTTCTGGAATTTGA 8885 | | |||||||| | || || |||| |||||||| |||||||| | |||||||| ||| Sbjct 212553 GCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCTGGAATATGA 212612 Query 8886 GGCCTTGGGGTTCCTAAATGCTGATCACTGGGTCAGTCGTGAAAACTTTCCTGGGGGTGT 8945 ||||||||| ||||| || | || || ||||| |||||||| || || || || || Sbjct 212613 GGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCCGGGCGGCGT 212672 Query 8946 GGGTGGAGTGGGTGTCAATTACTTTGGCAACTACCTAAAGGAAATTTCGCTCAAAGGCAA 9005 ||| || | || || || ||||||||| | ||| | ||||| | ||||| || Sbjct 212673 GGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTTCAAAAGGAAA 212732 Query 9006 GTATCTCTTTGCTGACGATATAGCAGGGTGGGATACGAAGGTGAGTTCTGAAGACCTTGA 9065 || | || |||| || || ||||| || ||||| || | ||| | || | | Sbjct 212733 GTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAGGCGGATTTGGC 212792 Query 9066 GGATGAAGAGACTCTCTTAACC-GAACT-GACTGCAAACCCCTTCCACCGCGCCCTAATC 9123 || |||||| ||| | | || |||| || || | | ||| | || || Sbjct 212793 CGACGAAGAG-TTCT-TCATCCTCAACTCGATTGAGGATGATTACCATAGAGCTCTGGCG 212850 Query 9124 GCCGCCACAATGAAGTTGGCTTACCGGAACATAGTGGCGATGTTTCCCCGCACCCACACG 9183 | | ||||| || || |||| || || ||||| |||||||||| ||||| | Sbjct 212851 GAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTCCCCGAACCCATTCT 212910 Query 9184 CGATACGGTAGCGGCACCGTTATGGATGTCGTCGGGCGCACCGACCAGCGAGGCTCAGGG 9243 || ||| || || || || |||||||| || || | || ||||||||||| ||| Sbjct 212911 GAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCGGATCAGCGAGGCTCGGGG 212970 Query 9244 CAGGTGGTAACGTATGCCTTGAATACTATAACGAACGGTAAAGTCCAAGTGGCCCGAACT 9303 |||||||| || ||||||||||| || || || || || || || || | | || ||| Sbjct 212971 CAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAAGGTTCAGATTGGCCAAACC 213030 Query 9304 CTCGAGAGTGAAGGTTTACTTTACGCTGACACACAAGTGATTGACCGTTGGCT 9356 || || |||||||| |||| | ||||| || ||||| ||| ||||| Sbjct 213031 CTTGAAAGTGAAGGGCTACTCGAAGCTGAACCAGTGGTGATCGACAAATGGCT 213083 >seq80 Length=2772702 Score = 95.1 bits (104), Expect = 9e-16 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 8614 AAAGAAGAATTCATCGCCAATGTTAGAAACGATGCAGCCATTGGTTCGTGGAGTCGGGAC 8673 |||||||||||||||||||| ||| |||| ||||| || || || |||||||| |||| Sbjct 114445 AAAGAAGAATTCATCGCCAACGTTCGAAATGATGCGGCTATAGGATCGTGGAGCAGGGAT 114386 Query 8674 GTCCCCTGGAGGGACGTTCAAGCAGCCGTGCAAGACCAAGGTTTCTGGAATC 8725 || || ||| | || || |||| |||| | || ||||| | |||||| ||| Sbjct 114385 GTGCCATGGCGAGATGTGCAAGAAGCCATTCAGGACCAGTGCTTCTGGGATC 114334 >seq2228 Length=1444863 Score = 82.4 bits (90), Expect = 5e-12 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 2693 TGTGCGGCAAGGCTATTGCATTCCAGTTT-ACGTTCACGGGATTTCGAAGGAGTTTGTAC 2751 |||| || || || ||||||||||| | || || |||| |||||| ||| |||||| Sbjct 1374924 TGTGTGGAAAAGCGATTGCATTCCAATACGACTTTGTCGGG-TTTCGACGGACTTTGTAT 1374982 Query 2752 GGGTCGAATGTACAAGTTGCCGTGTCAAAGCATGTGACTCGCCACTGTCCAACATACTTG 2811 || ||||| || || || || ||| || ||| | | | || ||||| ||| | Sbjct 1374983 GGATCGAACGTGCAGCTTAAGGTATCACAGACTGTCTCAAGTAATTGCCCAACGTACCTA 1375042 Query 2812 GCCGGGGTAGCCGTAAAAAATGACAGGACCATAATCACCGACGGGATGTTTTGGATG 2868 || ||| ||||||| || || ||| | || || | || ||||| |||||||||||| Sbjct 1375043 GCAGGGTTAGCCGTGAAGAACGACCGAACGATTTTTACGGACGGCATGTTTTGGATG 1375099 Score = 78.8 bits (86), Expect = 7e-11 Identities = 125/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 2693 TGTGCGGCAAGGCTATTGCATTCCAGTTT-ACGTTCACGGGATTTCGAAGGAGTTTGTAC 2751 |||| || || || ||||||||||| | || || |||| || ||| ||| |||||| Sbjct 1363249 TGTGTGGAAAAGCGATTGCATTCCAATACGACTTTGTCGGGGTT-CGACGGACTTTGTAT 1363307 Query 2752 GGGTCGAATGTACAAGTTGCCGTGTCAAAGCATGTGACTCGCCACTGTCCAACATACTTG 2811 || ||||| || || || || ||| || ||| | | | || ||||| ||| | Sbjct 1363308 GGATCGAACGTGCAGCTTAAGGTATCACAGACTGTCTCAAGTAATTGCCCAACGTACCTA 1363367 Query 2812 GCCGGGGTAGCCGTAAAAAATGACAGGACCATAATCACCGACGGGATGTTTTGGATG 2868 || ||| ||||||| || || ||| | || || | || ||||| |||||||||||| Sbjct 1363368 GCAGGGTTAGCCGTGAAGAACGACCGAACGATTTTTACGGACGGCATGTTTTGGATG 1363424 Score = 78.8 bits (86), Expect = 7e-11 Identities = 125/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 2693 TGTGCGGCAAGGCTATTGCATTCCAGTTT-ACGTTCACGGGATTTCGAAGGAGTTTGTAC 2751 |||| || || || |||||||||| | || || |||| |||||| ||| |||||| Sbjct 1407206 TGTGTGGGAAAGCGGTTGCATTCCAATACGACTTTGTCGGG-TTTCGACGGACTTTGTAT 1407264 Query 2752 GGGTCGAATGTACAAGTTGCCGTGTCAAAGCATGTGACTCGCCACTGTCCAACATACTTG 2811 || ||||| || || || || ||| || ||| | | | || ||||| ||| | Sbjct 1407265 GGATCGAACGTGCAGCTTAAGGTATCACAGACTGTCTCAAGTAATTGCCCAACGTACCTA 1407324 Query 2812 GCCGGGGTAGCCGTAAAAAATGACAGGACCATAATCACCGACGGGATGTTTTGGATG 2868 || ||| ||||||| || || ||| | || || | || ||||| |||||||||||| Sbjct 1407325 GCAGGGTTAGCCGTGAAGAACGACCGAACGATTTTTACGGACGGCATGTTTTGGATG 1407381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35287711432944