Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq58 91.5 1e-14 >seq58 Length=3045158 Score = 91.5 bits (100), Expect = 1e-14 Identities = 417/652 (64%), Gaps = 22/652 (3%) Strand=Plus/Plus Query 9784 AATTGGCCAGAATTTCTGAAAACAATCAATGATCATGGTTTGGATTGGGAAAAATTAGTA 9843 ||||||| || || || || |||||| || || || | ||| ||| |||| ||| Sbjct 2382397 AATTGGCGGGAGTTCCTCCAACGAATCAACGAGCACGGACTAGATCCAGAACAATTGGTA 2382456 Query 9844 ATAGGGTTGAAGGCTAAAGAAAGAGAATTAAAAATTGATGGCAGATTCTTCTCATTAATG 9903 || | | | || || || ||||| | || | || |||||||| | | ||| Sbjct 2382457 ATCGCCCTCAGAGCCAAGGAGAGAGAGATCAAGGAGAAGGGGAGATTCTTTGCCATGATG 2382516 Query 9904 TCATATGATATGAGAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTT 9963 ||| || | |||| ||||| || | || || | || || || | | | |||| Sbjct 2382517 GCATGGGAGCTACGAGAGTATTTCGTGGTGACCGAACACCTCATCAAGACCCATTTTGTT 2382576 Query 9964 CCATTATTCAAAGGATTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTA 10023 || ||||| | || | || ||||| || ||||| || |||| || | |||||| | Sbjct 2382577 CCGTTATTTCACGGGCTTACGATGGCCGACGACCACAACTCTGTCATCGAGAAAATGCTT 2382636 Query 10024 AAAGTATCTAAAGGACAGGG-CCTGATTGATTACA---AAGAGATTACGATCGCTAATCA 10079 || ||| | | ||| || ||| || || ||| | || | ||||||||| Sbjct 2382637 CTAGCATCAGACGCTCAGAATCCAGAT-GACCCCAGCCAAGTAA--ACTA-CGCTAATCA 2382692 Query 10080 TTTGGATTATGAGAAGTGGAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCG 10139 ||||||||| || ||||| ||| | || | ||| | || | || || ||||| Sbjct 2382693 CTTGGATTATTCAAAATGGAACAACCACCAGCGCGGCGAGGCTAACGATCCAGTATTCCG 2382752 Query 10140 AGTCATGGGTCAATTTTTGGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTTGA 10199 |||||||| ||||| ||||| | || ||| | | | |||| ||||||||||||| Sbjct 2382753 GGTCATGGGGCAATTCCTGGGCCTCCCAAATCTTTTGGTGCGAACACATGAGTTTTTTGG 2382812 Query 10200 AAAAAGTCTTATTTATTACAATGGGAGGCCTGACTTGATGACAGTGCGTGGTAAAGAA-- 10257 || || || || ||||| | |||| || |||||| ||| || || | | Sbjct 2382813 CAAGTCCCTGATATACTACAAGGACCGGCCGGATTTGATGCGAGT---TGAAAACGGAAC 2382869 Query 10258 ----GTGATCTCAAATAAAGGGGAAGTTGTTTGTTGGGAGGGTCAAAAAGGAGGCTTAGA 10313 |||| ||| | || ||| | || || ||| | || || ||| ||| |||| Sbjct 2382870 GGTGGTGACCTC---GACAGAGGAGATGGTATGCTGGAAAGGCCAGCCAGGCGGCCTAGA 2382926 Query 10314 AGGATTGAGACAAAAAGGGTGGAGTGTTCTCAATTGCCTAATGATCGAACGGGAATCAAA 10373 ||| | |||| || ||||||||||| | || | || ||| ||||| || | || Sbjct 2382927 AGGGCTCCGACAGAAGGGGTGGAGTGTGGTGAACTATCTCGGGATAGAACGACAAGCTAA 2382986 Query 10374 GATACGAAATACTCAAAT-AGGACTCTTGGCCCAAGGAGACAATCAAGTAAT 10424 || ||||| || || | ||| |||| || || || || || || |||| Sbjct 2382987 AATCCGAAACACGCAGGTCAGGTGTCTT-GCTCAGGGGGATAACCAGATAAT 2383037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46973416187880