Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq58 114 9e-22 >seq58 Length=3045158 Score = 114 bits (126), Expect = 9e-22 Identities = 366/563 (65%), Gaps = 6/563 (1%) Strand=Plus/Plus Query 6304 GGGAGATTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATAT 6363 |||||||| || | | ||| | ||| |||| |||| ||||| ||| | || ||| | Sbjct 2382496 GGGAGATTCTTTGCCATGATGGCATGGGAGCTACGAGAGTATTTCGTGGTGACCGAACAC 2382555 Query 6364 CTAATTAAGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACG 6423 || || ||||| || ||||| || | || ||||| | || ||||| || ||| | Sbjct 2382556 CTCATCAAGACCCATTTTGTTCCGTTATTTCACGGGCTTACGATGGCCGACGACCACAAC 2382615 Query 6424 GCTGTAATAAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGC- 6482 |||| || |||||||| | | ||| | ||| || | | || | || Sbjct 2382616 TCTGTCATCGAGAAAATGCTTCTAGCATCAGACGCTCAGAATCCAGATGACCC--CAGCC 2382673 Query 6483 -AGTATGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGT 6541 |||| | || || ||| | || ||| |||||||||||||| ||| | | Sbjct 2382674 AAGTAAACTACGCTAATCACTTGGATTATTCAAAATGGAACAACCACCAGCGCGGCGAGG 2382733 Query 6542 CAAATGAACCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGA 6601 | || || ||| | || |||||||| |||||| |||| | || || ||| | | Sbjct 2382734 CTAACGATCCAGTATTCCGGGTCATGGGGCAATTCCTGGGCCTCCCAAATCTTTTGGTGC 2382793 Query 6602 GGACTCATGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGA 6661 | || ||||| || |||| || || || || || || | |||| ||||||||| Sbjct 2382794 GAACACATGAGTTTTTTGGCAAGTCCCTGATATACTACAAGGACCGGCCGGATTTGATGC 2382853 Query 6662 AGGTGCAAGATGGAAGACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAGGACAGG 6721 || || | |||| | |||| | | || || | |||| || ||| |||| ||| Sbjct 2382854 GAGTTGAAAACGGAACGGTGGTGACCTCGACAGAGGAGATGGTATGCTGGAAAGGCCAGC 2382913 Query 6722 CAGGCGGATTAGAGGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTC 6781 ||||||| |||| ||| | |||||||||| ||||| | | |||| | | || Sbjct 2382914 CAGGCGGCCTAGAAGGGCTCCGACAGAAGGGGTGGAGTGTGGTGAACTATCTCGGGATAG 2382973 Query 6782 AAAGGGAATCCAAGATTCGGAACACAGCAGTTAAAGT-CCTTGCACAAGGTGATAATCAA 6840 || | || | || || || ||||| |||| | | || ||||| || || ||||| || Sbjct 2382974 AACGACAAGCTAAAATCCGAAACAC-GCAGGTCAGGTGTCTTGCTCAGGGGGATAACCAG 2383032 Query 6841 GTAATATGCACACAGTACAAGAC 6863 |||| |||||| |||||| || Sbjct 2383033 ATAATCTGCACATTGTACAAAAC 2383055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35364507322896