Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021069.1 Length=10865 Score E Sequences producing significant alignments: (Bits) Value seq100 152 4e-33 >seq100 Length=1779872 Score = 152 bits (168), Expect = 4e-33 Identities = 409/616 (66%), Gaps = 16/616 (3%) Strand=Plus/Plus Query 8815 CACCTGAAGGGAGATTGTGAGCTCTGTGTCTACAACACCATGGGCAAGAAGGAAAAGAAA 8874 |||||| || || |||| | | || || |||||||||||||| || || || ||| || Sbjct 212476 CACCTGGCCGGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAA 212535 Query 8875 CCGTCT-TCGTTCGGTGAAGCTCGCGGATCACGCATCATCTGGTACATGTGGTTGGGAAG 8933 ||| | | | | || || | ||||| || | ||| |||| |||||| ||||||| Sbjct 212536 CCGACCATAGCTGGG-GAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAG 212594 Query 8934 TAGGTTCCTCGAGTATGAAGCGCTCGGGTTCTTAAACGAAGACCATTGGGTCGCGCGGGA 8993 | | | || || ||||| || | || ||| | ||||||||||||||||| || || || Sbjct 212595 TCGATATCTGGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGA 212654 Query 8994 GAATTTTCCGTGCGGTGTCGGAGGTGTGGGAGTGAATTACTTTGGGTATTACCTAAAGGA 9053 ||||| ||| |||| || |||||| | || || || |||||||| |||||| | || Sbjct 212655 AAATTTCCCGGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGA 212714 Query 9054 GATCGCCCAGAAAGGACAATGGCTGATAGCCGACGACGTGGCAGGCTGGGACACTAAGAT 9113 || || |||||| | | | | ||||| ||| | || |||||||||||| || Sbjct 212715 AATAGCTTCAAAAGGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCAT 212774 Query 9114 CACGGAAGCTGACCTTGAAGACGAGTTGTGGCTGTTGCTCGACATGGTGCAGGATCCCTA 9173 | | || || | | ||||| || | | ||| || | | ||||| || Sbjct 212775 TAGTCAGGCGGATTTGGCCGACGAAGAGTTCTTCATCCTCAACTCGATTGAGGATGATTA 212834 Query 9174 CCATGCTCAACTCATATCCAGCGT-GTTTAAGCA--TTG-CTACATGAACATGGTTGCCC 9229 |||| | ||| | | || | | | | | ||| |||| || || || |||| Sbjct 212835 CCAT--AGAGCTC--TGGCGGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCC 212890 Query 9230 TGTTCCCTCGTAATCATCCCAAGTACAGAAGCGGCACGGTGTTCGACGTGCTATCCCGCA 9289 |||| || || | ||| | | | | | || || ||||| | || ||| | ||||| Sbjct 212891 TGTTTCCCCGAACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGAT 212950 Query 9290 CGGATCAACGTGGTTCCGGACAGGTCACAACCTACGCCCTCAACACAGTGACGAATGGAA 9349 ||||||| || || || || ||||| || || ||| | |||||| | || ||||||| Sbjct 212951 CGGATCAGCGAGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAA 213010 Query 9350 AAAATCAGGTGGGCCGAATGCTGGAAGCTGAAGGATTGCTGGAA---GAACCTCTACCTG 9406 | |||| | |||| || || ||| |||||| | || ||| ||||| | | Sbjct 213011 AGGTTCAGATTGGCCAAACCCTTGAAAGTGAAGGGCTACTCGAAGCTGAACC---AGTGG 213067 Query 9407 TGATCGACACGTGGCT 9422 ||||||||| ||||| Sbjct 213068 TGATCGACAAATGGCT 213083 Score = 113 bits (124), Expect = 3e-21 Identities = 234/349 (67%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 9588 CTGGGAGCAAGTCGAGTTTTGCTCCCACCACTTCCATGCTCTGGTACTGAGGGATGGGCG 9647 |||||||| || |||||||||||||| ||||||||| | || || | ||||| | Sbjct 244189 CTGGGAGCGCGTTGAGTTTTGCTCCCATCACTTCCATCCACTCCATCTCAAAGATGGAAG 244248 Query 9648 GGAGATCATTGCTCCATGTCGTGATCAGCATGAAATCATCGGGAGAGCTCGAATCCAGAA 9707 | | || || | |||||| || | |||| |||||||| |||||| |||| |||| || Sbjct 244249 GAAAATAATCGTTCCATGCCGCCACGAGCACGAAATCATTGGGAGAAGTCGAGTCCAAAA 244308 Query 9708 GGGAGGAGTTGTTAACATGTCCGCCGCCGGGTGCCTAGCCAAGGCTCATGCCCAAATGTG 9767 ||||| | || | ||| | | | || || | || || || | |||||||| Sbjct 244309 AGGAGGGCTCGTGACCATCCCAGAAAGTGCTTGTCTGTCAAAAGCCCACGGACAAATGTG 244368 Query 9768 GGGGTTGTATTACTTCCACCGCAGGGACTTGCGATTGGGTTTCGCGGCTATMGTRTCAGC 9827 || |||| | ||||| || | || |||| |||| | ||| || || || | Sbjct 244369 GGCTCTGTACTTTTTCCATCGGCGTGATCTGCGGGTGGGGTACGCAGCCATACATGCATC 244428 Query 9828 CGTTCCTTCAAACTGGATTCCGACAGGTCGCGTCTCCTGGTCCGTGCACCAGCACGCTGA 9887 |||||| || | ||| ||| | ||| ||||| | |||||||| || Sbjct 244429 CGTTCCAACAGATTGG-GTCCCAGAGG--------GGAGGTCCATCCACCAGCAATACGA 244479 Query 9888 GTGGATGACCACCCAAGACATGTTGGAGGTGTGGAACACCGTGTGGATC 9936 |||||||||||| || ||||| | || |||||||||| || | |||| Sbjct 244480 GTGGATGACCACGGAAAACATGCTTGATGTGTGGAACAGGGTTTAGATC 244528 Lambda K H 0.635 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34650945512092