Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq58 134 9e-28 seq15 84.2 1e-12 >seq58 Length=3045158 Score = 134 bits (148), Expect = 9e-28 Identities = 356/542 (66%), Gaps = 24/542 (4%) Strand=Plus/Plus Query 6004 ATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTT 6063 ||| | ||| | || |||| || |||||| | || || | ||||| ||||| |||||| Sbjct 2382514 ATGGCATGGGAGCTACGAGAGTATTTCGTGGTGACCGAACACCTCATCAAGACCCATTTT 2382573 Query 6064 GTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATG 6123 ||||| || ||||||||||| || ||||| ||||||| | |||| || |||||||| Sbjct 2382574 GTTCCGTTATTTCACGGGCTTACGATGGCCGACGACCACAACTCTGTCATCGAGAAAATG 2382633 Query 6124 ATGGAGTCATCTTCAGGACAAGGCGCCTCCGACT----ATGATGCCATTGCCATT----- 6174 | ||| || | || ||| || || | |||| ||| |||| Sbjct 2382634 CT-------TCT--AGCATCAGACGC-TCAGAATCCAGATGACCCCA--GCCAAGTAAAC 2382681 Query 6175 ---GCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAATGGT 6231 || || || | || ||| ||||||||| ||||| || || || | || | | Sbjct 2382682 TACGCTAATCACTTGGATTATTCAAAATGGAACAACCACCAGCGCGGCGAGGCTAACGAT 2382741 Query 6232 CCTGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTACCGGACGCAT 6291 || || ||| | |||||||| || ||||| || |||||| | | || || ||| Sbjct 2382742 CCAGTATTCCGGGTCATGGGGCAATTCCTGGGCCTCCCAAATCTTTTGGTGCGAACACAT 2382801 Query 6292 GAGTTTTTTGAGAATAGCCTCATATATTACAATAACAGACCCGACCTGATGAGAGTGGTG 6351 |||||||||| || ||| ||||| ||||| || | || || ||||| |||| | Sbjct 2382802 GAGTTTTTTGGCAAGTCCCTGATATACTACAAGGACCGGCCGGATTTGATGCGAGTTGAA 2382861 Query 6352 AATAATACCGTGGAGAACAGTTCTGATCAAAGAGTCTGCTGGAATGGTCAGGCAGGGGGG 6411 || || |||| || | | || | | || |||||||| || ||| |||| || Sbjct 2382862 AACGGAACGGTGGTGACCTCGACAGAGGAGATGGTATGCTGGAAAGGCCAGCCAGGCGGC 2382921 Query 6412 CTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTAAATTTGCTGGTGATAGCTAGGGAA 6471 || ||||| || || || || || |||||| | | || | || | ||||| | || Sbjct 2382922 CTAGAAGGGCTCCGACAGAAGGGGTGGAGTGTGGTGAACTATCTCGGGATAGAACGACAA 2382981 Query 6472 TCTCAGATTAGAAACACCTCTGTCAAAACTCTGGCACAGGGGGACAATCAGGTGATTTGC 6531 || | || ||||||| |||| ||| || |||||||| || ||| | || ||| Sbjct 2382982 GCTAAAATCCGAAACACGCAGGTCAGGTGTCTTGCTCAGGGGGATAACCAGATAATCTGC 2383041 Query 6532 AC 6533 || Sbjct 2383042 AC 2383043 >seq15 Length=2181291 Score = 84.2 bits (92), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 6382 AGAGTCTGCTGGAATGGTCAGGCAGGGGGGCTCGAAGGACTGCGGCAAAAAGGATGGAGT 6441 |||| |||||||| || ||| ||||| | || | ||| || ||||||||||||||| Sbjct 562415 AGAGCTTGCTGGAAAGGACAGTTCGGGGGATTAGAGGAACTACGACAAAAAGGATGGAGT 562356 Query 6442 ATATTAAATTTGCTGGTGATAGCTAGGGAATCTCAGATTAGAAACACCTCTGTCAAAACT 6501 | | || | || || |||| || ||||| ||||||||| || ||| | ||| Sbjct 562355 GTCCTCAACCTTCTCGTTATAGAAAGAGAATCATGGATTAGAAATACTCTTGTATAGACT 562296 Query 6502 CTGGCACAGGGGGACAATCAGGTGATTTGCACTCAATATAAGACAAAAAAT-TATAGAAA 6560 || || || |||||||| || ||||| || |||||| |||| |||| || ||| Sbjct 562295 TAAGCTCAAGGAGACAATCAAGTCATTTGTACACAATAT---ACAATAAATCCATCTAAA 562239 Query 6561 TGAGAATGA 6569 | || |||| Sbjct 562238 TCAGCATGA 562230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34097375138688