Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_024299.2 Length=10878 Score E Sequences producing significant alignments: (Bits) Value seq100 259 3e-65 seq3825 95.1 8e-16 >seq100 Length=1779872 Score = 259 bits (286), Expect = 3e-65 Identities = 411/590 (70%), Gaps = 0/590 (0%) Strand=Plus/Plus Query 8751 GACCCCCGGTTTTGGGAACTGGTTGATAGAGAAAGGAAGTTGCATCTCCAAGGAGACTGT 8810 |||||||||||||||||||| || | | ||||| || | || || || |||||| Sbjct 212434 GACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACTCCACCTGGCCGGGGACTGT 212493 Query 8811 GAGCTTTGCGTGTACAACACAATGGGGAAGAAGGAGAAAAAACCCTCAGTGTGTGGAGAG 8870 | | | |||||||||||||| |||||||| || ||||| |||| | | ||| ||| Sbjct 212494 GCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATAGCTGGGGAG 212553 Query 8871 GCAAAAGGCTCACGCACGATTTGGTATATGTGGCTTGGATGCCGTTTCCTAGAATACGAG 8930 | ||||| || || || ||| ||||||||||||| ||| | || | || ||||| ||| Sbjct 212554 CCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCTGGAATATGAG 212613 Query 8931 GCTTTAGGCTTTTTGAACGAAGATCACTGGGTTTCTCGCGAGTACCTTCCATGTGGAGTG 8990 || || ||||| | |||||||| || ||||| | || || | | || | || ||| Sbjct 212614 GCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCCGGGCGGCGTG 212673 Query 8991 GGCGGAATAGGAGTGAACTACTTCGGTTATTATCTGGAAGAAATCGCTAGGAAAGGACAC 9050 || || | || || |||||||| || ||||| || |||||| ||| |||||| | Sbjct 212674 GGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTTCAAAAGGAAAG 212733 Query 9051 TGGTTGGTGGCGGATGACGTGGCAGGATGGGACACCCGAATTACGGAATCAGACCTGGAA 9110 | || || || |||||| | || || |||||||| || |||| | | || ||| Sbjct 212734 TTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAGGCGGATTTGGCC 212793 Query 9111 GATGAGCTGTTCTTCCTGTTAGAGCTGGCCCARGATGATTACCATAGGAAGCTGATGTCA 9170 || || ||||||| | | | | | |||||||||||||| ||| | Sbjct 212794 GACGAAGAGTTCTTCATCCTCAACTCGATTGAGGATGATTACCATAGAGCTCTGGCGGAG 212853 Query 9171 TCCGTGTATAAAATGGCCTACCGGAACATTGTGGCTCTATTCCCGCGAAACCACCCAAAG 9230 || || ||| | ||||||| || |||||||| || || || |||| ||| | | Sbjct 212854 TCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTCCCCGAACCCATTCTGAA 212913 Query 9231 TACAGGAGTGGGACGGTGCTGGATGTGTTAACACGAACTGATCAAAGAGGCTCAGGGCAA 9290 | | ||||||| ||||| |||||||| | | ||| | ||||| ||||||| ||||| Sbjct 212914 TTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCGGATCAGCGAGGCTCGGGGCAG 212973 Query 9291 GTAGTAACATATGCGATGAACACGATTACAAATGCAAAAAATCAGGTTGG 9340 || || |||||||| ||||||| || || |||| ||| |||| |||| Sbjct 212974 GTGGTGACATATGCCTTGAACACAATCACCAATGGAAAGGTTCAGATTGG 213023 Score = 89.7 bits (98), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 8335 AAGCAACTTGGTTCGTAGACAAAGAACA-CCCTTACCAGTCTTTTGGATACCATGGATCG 8393 ||||| ||||||| | ||||| ||||| ||| |||||| ||||| |||||||| ||| Sbjct 212019 AAGCA-CTTGGTTTTTTGACAA-GAACAACCCCTACCAGACTTTTAAGTACCATGGTTCG 212076 Query 8394 TTCGTGACTGATGACATCTCTCCCGGAGGGCAGACCGTGAATCCGCTCATTCGTCGGGTG 8453 | |||||| |||||| || || || || || || || || || | || | | Sbjct 212077 TACGTGACAGATGACGTCAAAGTTGGTGGTCAAACTGTCAACCCTCTTGTCCGGAAGATT 212136 Query 8454 ATGTGGCCATGGGATTTTCTAAGCCGGGTGACTACTTTCATGATGACGGACGTGTCAACC 8513 |||||||| ||||| | | | || || | ||||||||||| ||| | ||||| Sbjct 212137 ATGTGGCCTTGGGAAGCCGTTGGAGGAGTAACAAACTTCATGATGACCGACATCTCAACG 212196 Query 8514 TACGCCCAGCAGAAGATTTTGAGGGAAAAGGTGGACAC 8551 ||| |||| || ||| || | |||| ||||| | ||| Sbjct 212197 TACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCAC 212234 >seq3825 Length=1042611 Score = 95.1 bits (104), Expect = 8e-16 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 9735 GCCCAGATGTGGGCATTGTACTTCTTTCACCGACGTGACTTAAGATTAGGATTTGCTGCC 9794 || ||||||||||| ||||||||||| ||| || | ||||| || |||||||| || ||| Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9795 ATAACCTCCATTGTGCCGAAGCACTGGGTGCCCACGGGAAGGGTGTCTTGGTCAGTGCAC 9854 || | || | ||| || | | ||| | || || | ||| ||||| | || Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCAT 957569 Query 9855 CAGAAAAAAGAGTGGATGACAACTAGA-GACATGTTGGAGGTTTGGAATGATGTTTGGAT 9913 || || || ||||||||||| ||| |||||| | || |||||| |||||||| Sbjct 957570 CAAAACTGTGAATGGATGACAAC-AGAGGACATGCTCACTGTATGGAATCGCGTTTGGAT 957628 Query 9914 AAGAGACAACCCCTGGATGAAGACGAAAGAAAGG 9947 ||||||||| |||||||| |||||| || Sbjct 957629 CCAAGACAACCCATGGATGAAACATAAAGAATGG 957662 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34692543285816