Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq58 84.2 2e-12 seq15 78.8 7e-11 >seq58 Length=3045158 Score = 84.2 bits (92), Expect = 2e-12 Identities = 361/557 (65%), Gaps = 18/557 (3%) Strand=Plus/Plus Query 6342 GGAAGATTTTTCTCCCTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTAC 6401 || ||||| || || | ||| ||||| || || | ||||| ||||| | || || || Sbjct 2382496 GGGAGATTCTTTGCCATGATGGCATGGGAGCTACGAGAGTATTTCGTGGTGACCGAACAC 2382555 Query 6402 TTGATCAAAACACACTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACA 6461 | ||||| || || | ||| ||||| || | || || |||||||| || |||| | Sbjct 2382556 CTCATCAAGACCCATTTTGTTCCGTTATTTCACGGGCTTACGATGGCCGACGACCACAAC 2382615 Query 6462 TCCGTTGTGAAGAAGATGTTGGACAACA-CAAATGGACAAGGATTG-GATGACTACTCCT 6519 || || | |||| ||| | | || || | | || | || |||||| | | Sbjct 2382616 TCTGTCATCGAGAAAATGCTTCT-AGCATCAGACGCTCA-GAATCCAGATGAC--CCCAG 2382671 Query 6520 CTATCTGTATT--GCCAACCACATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGA 6577 | | | | | || || ||| | || || ||||||||| || || ||| | || Sbjct 2382672 CCAAGTAAACTACGCTAATCACTTGGATTATTCAAAATGGAACAACCACCAGCGCGGCGA 2382731 Query 6578 GTCTAATGGTCCAGTGTTTCGAGTAATGGGACAGTTTCTAGGGTATCCTAGA-CTGTTTG 6636 | |||| | |||||| || || || ||||| || || || ||| ||| | | || || | Sbjct 2382732 GGCTAACGATCCAGTATTCCGGGTCATGGGGCAATTCCT-GGGCCTCCCAAATCTTTTGG 2382790 Query 6637 AAAGGACACATGAGTTCTTTG---AGTCCAGCCTCATCTACTACAATGGAAGACCAGACC 6693 | ||||||||||| |||| |||| ||| || |||||||| | | || || Sbjct 2382791 TGCGAACACATGAGTTTTTTGGCAAGTC---CCTGATATACTACAAGGACCGGCCGGATT 2382847 Query 6694 TGATG-GATGTGAGAGGGGATTCATTGATCAACACTACAGACAAATTAGTGTGTTGGGAG 6752 ||||| || ||| | ||| | || | | | | ||||| | | || || ||| | Sbjct 2382848 TGATGCGAGTTGAAAACGGA-ACGGTGGTGACCTCGACAGAGGAGATGGTATGCTGGAAA 2382906 Query 6753 GGACAAGCAGGAGGTCTGGAAGGATTGCGACAAAAAGGATGGAGCGTTTTGAACCTACTA 6812 || || |||| || || ||||| | ||||| || || ||||| || ||||| || Sbjct 2382907 GGCCAGCCAGGCGGCCTAGAAGGGCTCCGACAGAAGGGGTGGAGTGTGGTGAACTATCTC 2382966 Query 6813 GTCATAAACAGAGAGTCTTCCATCCGAAATACTGTGGTAAAGGTTCTTGCCCAAGGAGAC 6872 | ||| | || | || |||||||| || ||| | | |||||| || || || Sbjct 2382967 GGGATAGAACGACAAGCTAAAATCCGAAACACGCAGGTCAGGTGTCTTGCTCAGGGGGAT 2383026 Query 6873 AATCAGGTGATCTGCAC 6889 || ||| | |||||||| Sbjct 2383027 AACCAGATAATCTGCAC 2383043 >seq15 Length=2181291 Score = 78.8 bits (86), Expect = 7e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 6780 CGACAAAAAGGATGGAGCGTTTTGAACCTACTAGTCATAAACAGAGAGTCTTCCATCCGA 6839 ||||||||||||||||| || | ||||| || || ||| | ||||| || | || || Sbjct 562373 CGACAAAAAGGATGGAGTGTCCTCAACCTTCTCGTTATAGAAAGAGAATCATGGATTAGA 562314 Query 6840 AATACTGTGGTAAAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTGCACTCAATA 6895 |||||| | ||| || | || |||||||||||||| || || || || ||||| Sbjct 562313 AATACTCTTGTATAGACTTAAGCTCAAGGAGACAATCAAGTCATTTGTACACAATA 562258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35390105952880