Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_027819.1 Length=10938 Score E Sequences producing significant alignments: (Bits) Value seq100 237 1e-58 seq3825 96.9 2e-16 >seq100 Length=1779872 Score = 237 bits (262), Expect = 1e-58 Identities = 661/1005 (66%), Gaps = 32/1005 (3%) Strand=Plus/Plus Query 8471 ACCTGGTTTTACGACGAGGAACATCCCTACAATAGCTTCAAGTACTATGGATCATTCGCT 8530 || ||||||| ||| || | | |||||| | | || |||||| |||| || | || Sbjct 212023 ACTTGGTTTTTTGACAAGAACAACCCCTACCAGACTTTTAAGTACCATGGTTCGTACGTG 212082 Query 8531 GCGGACACGCGGTCA--GGTGGTGGACAGACGGTAAATCCCATGATCCGACGTGTCATGT 8588 | || | |||| | |||||| || || || || || | |||| | |||| Sbjct 212083 ACAGAT--GACGTCAAAGTTGGTGGTCAAACTGTCAACCCTCTTGTCCGGAAGATTATGT 212140 Query 8589 GGCCATGGGAAGAACA--GAAAAG-AACGACCTCCTATATGATGACAGATGTCTCCACGT 8645 |||| ||||||| || || ||| | || | |||||||| || |||| |||| Sbjct 212141 GGCCTTGGGAAGCCGTTGGAGGAGTAACAAACTTC---ATGATGACCGACATCTCAACGT 212197 Query 8646 ACGCCCAGCAGAAGATCCTCCGTGAGAAGGTTGACACGT---TGACGGAAGAACCCCCGG 8702 || |||| || ||| | ||||| |||||||| | ||| | | ||| ||| | Sbjct 212198 ACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCCCCGTCCCTGAA-----CCCAG 212252 Query 8703 CGAACA--TAAAACGGGTTAACAGACTCATCATGAAGTATTTTGTGCGCATGTTCAAGGA 8760 ||||| | ||| ||| || || ||||||||| | | || ||| ||||||| || Sbjct 212253 GGAACAGGTTAAAATGGTCAATAGGAAAATCATGAAGCACATGGTCCGCCTGTTCAAAGA 212312 Query 8761 CCGCGGTTTGAAACCACGTATCCTCACAGCCGCAGACTATGCCAGAAACGTGCAAAGCCA 8820 || ||||||| || || | || | |||| || || || | | | Sbjct 212313 AAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATCAAGAATGTCCGATCGGA 212372 Query 8821 TGCCGCCATTGGGGCGTGGAGCAAGGAAATTCCGTGGACCAGCGTGAATGAAGCGTTGGC 8880 ||| ||||||||| | |||||| | || | || ||||||| |||| || | Sbjct 212373 TGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAAGGTGACCACTGCCGTCAA 212432 Query 8881 TGATAGTGAATTCTGGAACATGGTGGATCGCGAACGGGCCAAAC---ATCTGGCGGGGGA 8937 ||| || ||| | | || | || ||| | |||| | ||||| ||||| Sbjct 212433 TGACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGA---AAACTCCACCTGGCCGGGGA 212489 Query 8938 TTGCGAAATGTGCATCTATAACACAATGGGAAAGAAGGAAAAGAAACCCACTGTGGCCGG 8997 || | |||||| | || ||||| ||||| || || || ||| |||| || | || || Sbjct 212490 CTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATAGCTGG 212549 Query 8998 ATTGGCAAAAGGATCTCGCACGATTTGGTACATGTGGCTCGGCAGTCGTTTCCTTGAGTA 9057 | | |||||||| || || ||| |||| |||||||| || ||||| | || || || Sbjct 212550 GGAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCTGGAATA 212609 Query 9058 TGAGGCATTGGGATTCTTGAATGAGGACCACTGGGTTGCCCGTGAAAACTTTCCTGGTGG 9117 |||||| ||||| ||| | || || ||||| ||||| ||||||||||| || || || || Sbjct 212610 TGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCCGGGCGG 212669 Query 9118 AGTTGGAGGTGAGGGAGTCAACTACTTCGGATACTACCTTGAGGAGATTGCTAAGAAAGG 9177 || |||||| || || |||||||| || || ||| | || || ||| ||||| Sbjct 212670 CGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTTCAAAAGG 212729 Query 9178 GAAGTATCTCGTGGCGGATGATGTCGCTGGATGGGACACGCGGATAACCCAGGCCGACTT 9237 |||| | |||| || ||||| | ||||| |||||||| || || | ||||| || || Sbjct 212730 AAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAGGCGGATTT 212789 Query 9238 GGATGACGAGGAGTACTTCATACTCGAACAGATAACCGATCCATACCACCGGAAATTGGT 9297 || ||||| |||| |||||| ||| | ||| ||| ||||| | ||| Sbjct 212790 GGCCGACGAAGAGTTCTTCATCCTCAACTCGATTGAGGATGATTACCATAGAGCTCTGGC 212849 Query 9298 GAAGGCGCTGTTCATGTTCGCATACAAGCACATCGTCGCCCTGTTTCCGAGAGACCATCC 9357 | || || | | | || || ||| | | || || ||||||||||| || |||| | Sbjct 212850 GGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTCCCCGAACCCATTC 212909 Query 9358 CCGCTTTGCTAGCAACACAGTCATGGACGTTGTGGTT---CGCACAGACCAGAGAGGCTC 9414 || | || || |||||||| ||||||| || | || ||| ||||||| Sbjct 212910 TGAATTCGGGAGTGGAACGGTCATGGA---TGTGGTTTCCCGATCGGATCAGCGAGGCTC 212966 Query 9415 AGGTCAGGTGGTCACCTATTCGATGAACACCATAACAAACGGAAA 9459 || |||||||| || ||| | ||||||| || || || ||||| Sbjct 212967 GGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAA 213011 Score = 143 bits (158), Expect = 2e-30 Identities = 240/342 (70%), Gaps = 15/342 (4%) Strand=Plus/Plus Query 9707 GTTGAGTTCTGCTCGCACCACTACCACCGGCTGCACATGAAGGATGGAAGGGAAATAATA 9766 |||||||| ||||| || |||| ||| | || || | || ||||||||| ||||||| Sbjct 244199 GTTGAGTTTTGCTCCCATCACTTCCATCCACTCCATCTCAAAGATGGAAGGAAAATAATC 244258 Query 9767 GCGCCTTGTCGTGATCAATTCGAAATCATCGGAAGAAGCAGAATCCAGAAAGGAGGCGTT 9826 | || || || | | ||||||||| || ||||| || |||| |||||||| | Sbjct 244259 GTTCCATGCCGCCACGAGCACGAAATCATTGGGAGAAGTCGAGTCCAAAAAGGAGGGCTC 244318 Query 9827 GTTTCCCTTGGAGACAGCGGGTGTCTCGCCAAAGCGTATGCGCAAATGTGGGCTTTGTAT 9886 || || | ||| || | ||||| | ||||| | | |||||||||||| |||| Sbjct 244319 GTGACCATCCCAGAAAGTGCTTGTCTGTCAAAAGCCCACGGACAAATGTGGGCTCTGTAC 244378 Query 9887 TTCTTCCATCGTCGTGATCTGCGGTTAGGCTTTGCTGCCATAACAT-CATGCGTGCCCAA 9945 || |||||||| |||||||||||| | || | || ||||| |||| ||| ||| || | Sbjct 244379 TTTTTCCATCGGCGTGATCTGCGGGTGGGGTACGCAGCCAT-ACATGCATCCGTTCCAAC 244437 Query 9946 GGATTGGGTTCCAACCGGACGCACCACGTGGTCTGTACACCACGGGAGT--GAGTGGATG 10003 |||||||| ||| || | | |||| | ||||| | | | ||||||||| Sbjct 244438 AGATTGGGTCCCA----GAGG-----GGAGGTCCATCCACCA--GCAATACGAGTGGATG 244486 Query 10004 ACGACTGAGGACATGCTATCCGTTTGGAACAGAGTTTGGATC 10045 || || || ||||||| || |||||||| |||| |||| Sbjct 244487 ACCACGGAAAACATGCTTGATGTGTGGAACAGGGTTTAGATC 244528 >seq3825 Length=1042611 Score = 96.9 bits (106), Expect = 2e-16 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 9866 GCGCAAATGTGGGCTTTGTATTTCTTCCATCGTCGTGATCTGCGGTTAGGCTTTGCTGCC 9925 ||||| |||||||||||||| |||||||| | | || || ||||||| || || ||| Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9926 ATAACATCATGCGTGCCCAAGGATTGGGTTCCAACCGGACGCACCACGTGGTCTGTACAC 9985 || | || | || || ||| ||| | || || || || ||||||| | || Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCAT 957569 Query 9986 CACGGGAGTGAGTGGATGACGACTGAGGACATGCTATCCGTTTGGAACAGAGTTTGGATC 10045 || |||| |||||||| || ||||||||||| | || ||||| | ||||||||| Sbjct 957570 CAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGATC 957629 Query 10046 GAAAACAACAAGTGGATG 10063 || ||||| |||||| Sbjct 957630 CAAGACAACCCATGGATG 957647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34884533010696