Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq58 150 2e-32 >seq58 Length=3045158 Score = 150 bits (166), Expect = 2e-32 Identities = 547/842 (65%), Gaps = 33/842 (4%) Strand=Plus/Plus Query 9384 CGGTGATAAATGGCACACCTTACCATTAACCAAATGTTTTGATGTTCCCGA-TATGATTG 9442 ||||||| |||||| | | |||||||| ||||| |||||| | || || ||| ||| Sbjct 2382209 CGGTGATGTATGGCATCTCCTGCCATTAACAAAATGCTTTGATATCCCTGACTATC-TTG 2382267 Query 9443 ATCCAAGTATGATCTATAGTGACAAATCACACTCTATGCAAAGAAGTGAAGTGTTGGAAT 9502 |||| | || | |||||| ||||||||| || | | |||||||| Sbjct 2382268 ATCCGACGATACGCC-----GACAAACATCACTCTATGGGGAGGAAAAAGGTGTTGGAGC 2382322 Query 9503 GTATACAAAATCATTCAGATAAACCAATCCCTACCAGGAGGGTTCTCAAAACATTATTAG 9562 ||| ||| | ||| | |||| ||||| | | ||||| || | | | | Sbjct 2382323 ATATTGAAATGAAGCCAGCTCAACCGATCCCGTCGCAGTCCGTTCTGGAATCCTATCTTG 2382382 Query 9563 AGAAAGAAGCTACAGATTGGCCGAAGTTCCTAGAAAGAGTAGATAAATACGGGTTGGATT 9622 || |||| |||| |||||| | ||||||| || || | | | |||| | ||| Sbjct 2382383 AGCGAGAACCTACGAATTGGCGGGAGTTCCTCCAACGAATCAACGAGCACGGACTAGATC 2382442 Query 9623 GGGAATCCTTGGTAATTGGCCTTAAAGGGAAAGAGAGGGAATTGAA--AGAAGCCGGACG 9680 ||| |||||||| | ||| | || || ||||| || | || ||||| ||| | Sbjct 2382443 CAGAACAATTGGTAATCGCCCTCAGAGCCAAGGAGAGAGAGATCAAGGAGAAGG-GGA-G 2382500 Query 9681 ATTCTTTTCCTTAATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTACTGAT 9740 ||||||| || | ||| | ||||| || | || |||||||| || || ||| || || Sbjct 2382501 ATTCTTTGCCATGATGGCATGGGAGCTACGAGAGTATTTCGTGGTGACCGAACACCTCAT 2382560 Query 9741 TAAACAACATTATGTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAAACTGT 9800 || |||| ||| ||| || | || | || ||||| || || | | | |||| Sbjct 2382561 CAAGACCCATTTTGTTCCGTTATTTCACGGGCTTACGATGGCCGACGACCACAACTCTGT 2382620 Query 9801 CATAAAGAAAATGCTTGATACCTCACATGGTCAGGGAACCCGTACATATGATGCCATC-- 9858 ||| ||||||||||| | ||| | | |||| || || | |||| ||| | Sbjct 2382621 CATCGAGAAAATGCTTCTAGCATCAGACGCTCAG--AATCC----AGATGACCCCAGCCA 2382674 Query 9859 ----ACCATTGCCAATAACATAGACTATGAAAAATGGAATAATTATCAGAGAATGGAATC 9914 | | || ||| || | || ||| ||||||||| || | ||| | || | Sbjct 2382675 AGTAAACTACGCTAATCACTTGGATTATTCAAAATGGAACAACCACCAGCGCGGCGAGGC 2382734 Query 9915 AAACGGTCCTGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTCAG 9974 |||| ||| |||||| | || ||||| |||||| |||| || ||| | | | | Sbjct 2382735 TAACGATCCAGTATTCCGGGTCATGGGGCAATTCCTGGGCCTCCCAAATCTTTTGGTGCG 2382794 Query 9975 GACCCATGAGTTTTTTCAGAAAAGTT--TAATTTATTATAATCAAAGACCTGATTTGATG 10032 || |||||||||||| | |||| | || || || || | | || ||||||||| Sbjct 2382795 AACACATGAGTTTTTT--GGCAAGTCCCTGATATACTACAAGGACCGGCCGGATTTGATG 2382852 Query 10033 AGAGTAGTTG--GGAAAAGTGCTATGAACAGTACTAAACATATCGTGTGCTGGGAAGGGC 10090 |||| | |||| ||| | || | || | | || || |||||| |||| | Sbjct 2382853 CGAGTTGAAAACGGAACGGTGGT--GACCTCGACAGAGGAGATGGTATGCTGGAAAGGCC 2382910 Query 10091 AGCTGGGTGGTTTAGAAGGGCTGAGACAAAAGGGGTGGAGTGTTGTCAATTATTTAATGA 10150 ||| || || |||||||||| |||| |||||||||||||| || || ||| | || Sbjct 2382911 AGCCAGGCGGCCTAGAAGGGCTCCGACAGAAGGGGTGGAGTGTGGTGAACTATCTCGGGA 2382970 Query 10151 TTGAACGAGAATCTAAAGTAAGAAACACCTTAGTGAAAGTGT-TGGCTCAGGGAGACAAC 10209 | |||||| || ||||| | |||||| | || | |||| | |||||||| || ||| Sbjct 2382971 TAGAACGACAAGCTAAAATCCGAAACA-CGCAGGTCAGGTGTCTTGCTCAGGGGGATAAC 2383029 Query 10210 CA 10211 || Sbjct 2383030 CA 2383031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46208658254031