Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_029054.1 Length=10182 Score E Sequences producing significant alignments: (Bits) Value seq100 100 2e-17 >seq100 Length=1779872 Score = 100 bits (110), Expect = 2e-17 Identities = 213/315 (68%), Gaps = 5/315 (2%) Strand=Plus/Plus Query 8815 TGCATCTACAACATGATGGGGAAGAGAGAAAAGAAACCATCTGAATTCGGGAGAGCC-AA 8873 ||| | ||||||| |||||||| | ||| ||| |||| | | ||| ||||| || Sbjct 212500 TGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATAGCTGGG-GAGCCGAA 212558 Query 8874 AGGAAGCAGGGCAATCTGGTACATGTGGCTTGGGGCTCGCTTTCTGGAGTTTGAGGCACT 8933 |||| | || | || |||| |||||||| || ||| | |||||| | |||||| | Sbjct 212559 AGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCTGGAATATGAGGCCTT 212618 Query 8934 GGGATTCCTCAATGAAGACCATTGGCTCGGCAGAGAGAATTCCAAGGCGGGAGTTGAGGG 8993 ||| |||||||| |||||||||||| | | | | || |||| | || || || | || Sbjct 212619 GGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCCGGGCGGCGTGGGAGG 212678 Query 8994 GATCGGGCTCCAGTATCTTGGCTATGTCGTAGAAGAGGTAGCCCGGAAAGGTAATGGACT 9053 |||| | | || |||||||| | | ||| |||| ||||| || | Sbjct 212679 TCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTTCAAAAGGAAA---GTT 212735 Query 9054 TGTTTATGCAGATGATACAGCAGGCTGGGACACTAGGATCACTGAAGCTGATTTGGAGGA 9113 | | ||| ||||| | ||| |||||||||||| | || | | | || ||||||| || Sbjct 212736 TTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAGGCGGATTTGGCCGA 212795 Query 9114 TGAACAATACATCAT 9128 ||| | | | |||| Sbjct 212796 CGAAGAGTTCTTCAT 212810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32465462477208