Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_030290.1 Length=10864 Score E Sequences producing significant alignments: (Bits) Value seq100 309 2e-80 seq3825 100 2e-17 >seq100 Length=1779872 Score = 309 bits (342), Expect = 2e-80 Identities = 691/1019 (68%), Gaps = 30/1019 (3%) Strand=Plus/Plus Query 8441 GATGAGAATGCAAGGACGTGGTTTTTTGATGATGAGAATCCATACAACAGTTTCAAGTAC 8500 ||||| ||| ||| || ||||||||||| | | || || ||| | | ||| |||||| Sbjct 212008 GATGAAAATCTAAGCACTTGGTTTTTTGACAAGAACAACCCCTACCAGACTTTTAAGTAC 212067 Query 8501 TTTGGTTCATTTGTAAC---TGACACCAGATCAGCTGGAGGACAAACTGTAAATCCAATG 8557 |||||| | || || |||| || | | ||| || |||||||| || || | Sbjct 212068 CATGGTTCGTACGTGACAGATGACGTCAAA---GTTGGTGGTCAAACTGTCAACCCTCTT 212124 Query 8558 ATCCG-ACGAGTAATGTGGCCATGGGAGGAA-TTGAAGAA--AACGACCTCATACATGAT 8613 |||| | || || ||||||| ||||| | ||| || | ||| | || |||||| Sbjct 212125 GTCCGGAAGATTA-TGTGGCCTTGGGAAGCCGTTGGAGGAGTAACAAACTT---CATGAT 212180 Query 8614 GACGGATGTTTCAACCTACGCACAGCAGAAAGTACTACGAGAAAAGGTGGACACTTTGAC 8673 ||| || | ||||| ||| | || || || || || || || ||||| | ||| Sbjct 212181 GACCGACATCTCAACGTACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCCCCGT 212240 Query 8674 CGAGGAACCTCCAGCGAACA--TAAAGAGAGTCAATCGTCTCATAATGAAACACTTTGTA 8731 | ||||| ||| ||||| | || | |||||| | || ||||| ||| | || Sbjct 212241 CCCTGAACC--CAGGGAACAGGTTAAAATGGTCAATAGGAAAATCATGAAGCACATGGTC 212298 Query 8732 AAAATGTTTAAGGAGAAGAGACTTCGGCCACGCATTTTATCATCTCGAGAATATGCGGAG 8791 |||| || || || | || || || ||||| | | | || | || Sbjct 212299 CGCCTGTTCAAAGAAAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATCAAG 212358 Query 8792 AACGTCCAGAGTC--ACGCTGCCATAGGTGCCTGGAGCAAAGAGATTCCTTGGAAAAATG 8849 || |||| || || | |||||||| || | |||||| |||| | ||||||| || | Sbjct 212359 AATGTCC-GA-TCGGATGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAAGG 212416 Query 8850 T---CGCTGACGCACTATCTGACTCAAATTTCTGGGACATGGTTGATAGAGAGCGAACAA 8906 | | ||| || | || ||| | || ||||| | || | | || ||| | Sbjct 212417 TGACCACTGCCGT-CAAT--GACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAAC 212473 Query 8907 AACATCTGGCCGGAGATTGTGAGATGTGTATTTATAATACCATGGGGAAAAAAGAGAAAA 8966 || |||||||| || |||| |||||| | || || |||||||||||||||||||| Sbjct 212474 TCCACCTGGCCGGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGC 212533 Query 8967 AGCCAACCGTGGCTGGTTTGGCTAAAGGATCAAGAACAATTTGGTACATGTGGCTTGGAA 9026 | || ||| | ||||| | | |||||||| | || ||| |||| |||||||| |||| Sbjct 212534 AACCGACCATAGCTGGGGAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAA 212593 Query 9027 GTCGTTTCCTCGAGTACGAGGCTCTAGGGTTCCTCAATGAAGATCATTGGGTAGCCCGCG 9086 |||| | || || || ||||| | || |||||||| ||||| |||||||||||||| | Sbjct 212594 GTCGATATCTGGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTG 212653 Query 9087 AGAACTTCCCCTGTGGCGTAGGGGGAGAAGGAGTCAACTACTTTGGCTATTACCTCGAGG 9146 | || ||||| | ||||| || || || || |||||||||||||||||| | | Sbjct 212654 AAAATTTCCCGGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAG 212713 Query 9147 ACATAGCGAAGCGAGGTAAGTACTTAGTCGCCGATGATGTGGCCGGATGGGACACTCGGA 9206 | ||||| ||| |||| || || |||||||| | || || ||||||||||| | Sbjct 212714 AAATAGCTTCAAAAGGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCA 212773 Query 9207 TCACGCAAGCGGATTTGGACGATGAAGAGTTCTTCATCTTAGAACTC-ATAGATGATCCG 9265 | | || |||||||||| ||| ||||||||||||||| | ||||| || || ||| Sbjct 212774 TTAGTCAGGCGGATTTGGCCGACGAAGAGTTCTTCATCCT-CAACTCGATTGAGGATGAT 212832 Query 9266 TACCACAGGAAACTCGTCCAGTCCTTGTTCACATTCGCATACAAACATGTGGTGGCTCTG 9325 ||||| || || | |||| | | | ||| || ||| || || | ||||| ||| Sbjct 212833 TACCATAGAGCTCTGGCGGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTG 212892 Query 9326 TTTCCAAGGGACCATCCAAAGTACGCGAGCGGAACTGTGATGGATGTCGTTGTCCGTACT 9385 ||||| | |||| | | | || ||| ||||| || |||||||| ||| ||| | Sbjct 212893 TTTCCCCGAACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCG 212952 Query 9386 GATCAACGCGGATCAGGCCAAGTGATAACGTATGCCATGAATACAATAACGAACGCAAA 9444 ||||| || || || || || ||| | || |||||| |||| ||||| || || | ||| Sbjct 212953 GATCAGCGAGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAA 213011 >seq3825 Length=1042611 Score = 100 bits (110), Expect = 2e-17 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9854 CAGATGTGGGCACTGTATTTCTTCCACAGACGTGACTTACGACTTGGTTTCGCGGCAGTC 9913 ||||||||||| |||| |||||||||||| | ||||| | | || |||||||| || Sbjct 957453 CAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCCATC 957512 Query 9914 AATTCATGTGTTCCTAGTGAGTGGATGCCAACTGGCCGAACCACATGGTCTTTACACCAT 9973 ||| |||||||| || ||| | || |||||||| | ||||| | || || Sbjct 957513 GCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCATCAA 957572 Query 9974 GGGAGCGATTGGATGACTACTGAGGACATGCTCTCAGTGTGGAACCGAGTGTGGATTTTG 10033 | || |||||||| || |||||||||||| | || ||||| || || ||||| Sbjct 957573 AACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGATCCAA 957632 Query 10034 GACAACAAGTGGATG 10048 |||||| |||||| Sbjct 957633 GACAACCCATGGATG 957647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34647745683344