Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_030400.1 Length=10122 Score E Sequences producing significant alignments: (Bits) Value seq100 277 1e-70 seq3825 120 2e-23 >seq100 Length=1779872 Score = 277 bits (306), Expect = 1e-70 Identities = 683/1023 (67%), Gaps = 20/1023 (2%) Strand=Plus/Plus Query 8281 GAAAATCGAAGCACGTGGTTGGTTGACAACGACCATCCTTATGTTTCTTTTAATTATCAT 8340 ||||||| |||||| ||||| ||||||| || | || || ||||||| || ||| Sbjct 212011 GAAAATCTAAGCACTTGGTTTTTTGACAAGAACAACCCCTACCAGACTTTTAAGTACCAT 212070 Query 8341 GGATCCTTTGTTACAGACGCCATTAATGCAGGTGGTCAAACCACCAACCCCCTAATTCG- 8399 || || | || ||||| | | | || | ||||||||||| |||||| || | || Sbjct 212071 GGTTCGTACGTGACAGATGACGTCAAAGTTGGTGGTCAAACTGTCAACCCTCTTGTCCGG 212130 Query 8400 ACGAGTGATGTGGCCGTGGGA--CTTTTTGTCCCGCGTGACTACATTTATGATGACGGAC 8457 | || | |||||||| ||||| | || | | || || | || |||||||| ||| Sbjct 212131 AAGATT-ATGTGGCCTTGGGAAGCCGTTGGAG--GAGTAACAAACTTCATGATGACCGAC 212187 Query 8458 GTCTCTACATATGCTCAGCAGAAGATCCTTCGGGAAAAAGTCGACACA---GTCTCTGAT 8514 |||| || || | || || ||| | || ||||| || || | ||| ||| |||| Sbjct 212188 ATCTCAACGTACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCCCCGTCCCTGAA 212247 Query 8515 GAGCCGAATGAACATCTGAAAGGGATAAACCGGTTGATAATGCGACACTTTGTAAAGATG 8574 || | ||||| | ||| | | || || || ||| ||| | || || Sbjct 212248 ---CCCAGGGAACAGGTTAAAATGGTCAATAGGAAAATCATGAAGCACATGGTCCGCCTG 212304 Query 8575 TTTAAGAAACGATCTTTGAAACCACGAATTTTGACCCCCCAAGAATATGCTAATAATGTG 8634 || || || | ||||||| || |||||||| | || | || ||||| Sbjct 212305 TTCAAAGAAAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATCAAGAATGTC 212364 Query 8635 CAGTCCCGCGCAGCGGTTGGAGGGTGGAGTGAAGAAATGTCGTGGGAGGACGTAAAGAGT 8694 | || || || |||| ||||| |||| | | ||| | || | | | Sbjct 212365 CGATCGGATGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAAGGTGACCACT 212424 Query 8695 GCCATCGCTGACCCGAAATTTTGGGATCTTGTTGACCGTGAACGGAAGCTCCATCTCCAG 8754 ||| || |||||| |||||||| || || |||| ||| | || ||||| || Sbjct 212425 GCCGTCAATGACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACTCCACCTGGCC 212484 Query 8755 GGTGATTGTGAACTCTGCGTTTACAACACAATGGGTAAAAAAGAAAAGAAGCCGTCCGC- 8813 || || |||| | ||||| |||||||| ||||| |||||||| ||| | ||| || Sbjct 212485 GGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATA 212544 Query 8814 -CTTCGGAGCCGCTAAAGGGTCACGTACCATATGGTACATGTGGCTCGGAAGCCGGTTTT 8872 || ||||||| ||||| || || ||||| |||| |||||||| ||||| || | | Sbjct 212545 GCTGGGGAGCCG--AAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATC 212602 Query 8873 TGGAATACGAGGCGCTTGGCTTTTTGAACGAGGACCATTGGGTGGCCAGAGACAATTTCC 8932 ||||||| ||||| | ||||| | ||||| ||||||||||| ||| | || ||||||| Sbjct 212603 TGGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCC 212662 Query 8933 CATGCGGTGTGGGAGGAGTAGGAGTCAATTATTTTGGCTACTACTTAAAAGAAATAGCTG 8992 | |||| |||||||| | || || || || |||||||| ||||| |||||||||| Sbjct 212663 CGGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTT 212722 Query 8993 CCCGCGGCAAGTGGATGATTGCAGATGACGTTGCGGGTTGGGACACAAGAATAACGCAAG 9052 | || |||| | |||| |||||| | || || |||||||| | || | || | Sbjct 212723 CAAAAGGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAGG 212782 Query 9053 CAGATCTTGATGATGAAATGTTCTTCCTCACAGAACTTG-CTGAAACTCCATACCATA-A 9110 | ||| | | || ||| ||||||| || | |||| | ||| | ||||||| | Sbjct 212783 CGGATTTGGCCGACGAAGAGTTCTTCATC-CTCAACTCGATTGAGGATGATTACCATAGA 212841 Query 9111 GCGATTGATTGAGGCAACCTTCAATCTGGCATATAAAAACATTGTCGCCCTGTTTCCGCG 9170 || || ||| | | | || | || || |||| ||||| ||||||||||| || Sbjct 212842 GC-TCTGGCGGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTCCCCG 212900 Query 9171 CAACCACCCGAAATACCGTAGCGGAACAGTGTTGGATGTCCTCTCACGAACAGATCAAAG 9230 | ||| | ||| | | || ||||| || ||||||| | || ||| | ||||| | Sbjct 212901 AACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCGGATCAGCG 212960 Query 9231 AGGATCCGGGCAAGTAACAACATATGCCTTAAACACAATAACTAATGGCAAATGTCAGCT 9290 ||| || ||||| || ||||||||||| |||||||| || ||||| || |||| | Sbjct 212961 AGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAAGGTTCAGAT 213020 Query 9291 TGG 9293 ||| Sbjct 213021 TGG 213023 Score = 89.7 bits (98), Expect = 3e-14 Identities = 230/345 (67%), Gaps = 13/345 (4%) Strand=Plus/Plus Query 9514 ACGAATTGGGAAGACGTTGAGTTTTGCTCACATCATTTTCACCAGTTGGTTCTCCGGGAT 9573 |||| ||||| ||||||||||||||| ||||| || || | | |||| ||| Sbjct 244184 ACGATCTGGGAGCGCGTTGAGTTTTGCTCCCATCACTTCCATCCACTCCATCTCAAAGAT 244243 Query 9574 GGGAGAATGCTAATAGCCCCTTGCAGGGACCAAAATGAAATAATAGGAAGGTCTCGCATC 9633 || || | |||| | || ||| | || | | ||||| || || || ||| || Sbjct 244244 GGAAGGAAAATAATCGTTCCATGCCGCCACGAGCACGAAATCATTGGGAGAAGTCGAGTC 244303 Query 9634 CAGAAGGGAGGCATTGTTGACATGTCTGCAGCAGGTTGTTTGGCTAAAGCGCATGCCCAG 9693 || || ||||| | || ||| | | | | |||| || | ||||| || | || Sbjct 244304 CAAAAAGGAGGGCTCGTGACCATCCCAGAAAGTGCTTGTCTGTCAAAAGCCCACGGACAA 244363 Query 9694 ATGTGGGCATTGTATTTTTTCCATAGGCGCGATTTAAGGCTAGGGTTTGCCGCCATCACA 9753 |||||||| |||| ||||||||| |||| ||| | || | |||| || ||||| ||| Sbjct 244364 ATGTGGGCTCTGTACTTTTTCCATCGGCGTGATCTGCGGGTGGGGTACGCAGCCAT-ACA 244422 Query 9754 T-CAATTGTGCCGTCTAATTGGGTGCCAACCGGCAGGATCTCGTGGTCCATTCACCA-AA 9811 | || || || | ||||||| ||| ||| | ||||||| ||||| | Sbjct 244423 TGCATCCGTTCCAACAGATTGGGTCCCA-----GAGG----GGAGGTCCATCCACCAGCA 244473 Query 9812 ATGCAGAATGGATGACGACTGAAGATATGCTCGTGGTGTGGAACA 9856 || | || |||||||| || ||| | ||||| | |||||||||| Sbjct 244474 ATAC-GAGTGGATGACCACGGAAAACATGCTTGATGTGTGGAACA 244517 >seq3825 Length=1042611 Score = 120 bits (132), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 9688 GCCCAGATGTGGGCATTGTATTTTTTCCATAGGCGCGATTTAAGGCTAGGGTTTGCCGCC 9747 || ||||||||||| ||||| || ||||| || | || || ||| |||| || || ||| Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9748 ATCACATCAATTGTGCC-GTCTAATTGGGTGCCAACCGGCAGGATCTCGTGGTCCATTCA 9806 ||| | || | ||| || || ||| || | || ||| | | |||||||||||||| Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAAT-GGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCA 957568 Query 9807 CCAAAATGCAGAATGGATGACGACTGAAGATATGCTCGTGGTGTGGAACAACGTGTGGAT 9866 ||||| ||||||||||| || || || |||||| || ||||| ||| ||||| Sbjct 957569 TCAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGAT 957628 Query 9867 TCGAGATAACCCGTGGATGAAAACTAAAGA 9896 | ||| ||||| ||||||||| |||||| Sbjct 957629 CCAAGACAACCCATGGATGAAACATAAAGA 957658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32273472752328