Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq58 122 6e-24 >seq58 Length=3045158 Score = 122 bits (134), Expect = 6e-24 Identities = 351/533 (66%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 6218 ACGGAATAGAGCTGAAGCATTTGATCATTGGCCTTAAGGCGAAAGAGAGGGAACTAAAAG 6277 ||||| |||| | | || ||| | || | ||| | || || ||||| || | || | Sbjct 2382431 ACGGACTAGATCCAGAACAATTGGTAATCGCCCTCAGAGCCAAGGAGAGAGAGATCAAGG 2382490 Query 6278 CACAGGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGG 6337 |||| |||||||| || || | | |||| || |||||||||| || || || | Sbjct 2382491 AGAAGGGGAGATTCTTTGCCATGATGGCATGGGAGCTACGAGAGTATTTCGTGGTGACCG 2382550 Query 6338 AATATCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACT 6397 || | || || |||| |||||| | || | ||| | || || || ||||| || ||| Sbjct 2382551 AACACCTCATCAAGACCCATTTTGTTCCGTTATTTCACGGGCTTACGATGGCCGACGACC 2382610 Query 6398 TGACTACCCT--CACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATA 6455 || || || || | |||| ||||| | || | ||| | | || || Sbjct 2382611 --ACAACTCTGTCATCGAGAAAATGCTTCTAGCATCAGACGCTCA-GAATCCAGATGACC 2382667 Query 6456 CGA-CAAAATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATCAAAGGA 6514 | | | || | | || ||||| || ||||||||| || |||||||| | || | Sbjct 2382668 CCAGCCAAGTAAACTACGCTAATCACTTGGATTATTCAAAATGGAACAACCACCAGCGCG 2382727 Query 6515 TTGAGTCCAACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTA 6574 ||| | |||| || || ||| |||||||| || || ||||| ||||||||| Sbjct 2382728 GCGAGGCTAACGATCCAGTATTCCGGGTCATGGGGCAATTCCTGGGCCTCCCAAATCTTT 2382787 Query 6575 TATATCGAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGATT 6634 | |||||||||||||| || || | | || |||||||| || ||||||||| Sbjct 2382788 TGGTGCGAACACATGAGTTTTTTGGCAAGTCCCTGATATACTACAAGGACCGGCCGGATT 2382847 Query 6635 TGATGGTAGTAGAGAACGGGATGATAGTGA-ATCGCACTGAAGAGAGAGTAGTGTGGAAC 6693 ||||| ||| || ||||| | | | |||| ||| || || |||| ||| ||||| Sbjct 2382848 TGATGCGAGTTGAAAACGGAACGGTGGTGACCTCG-ACAGAGGAGATGGTATGCTGGAAA 2382906 Query 6694 GGACAAGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGTTTTGAA 6746 || || | || || | ||||| | | ||||| || |||||||| |||| Sbjct 2382907 GGCCAGCCAGGCGGCCTAGAAGGGCTCCGACAGAAGGGGTGGAGTGTGGTGAA 2382959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35610894136492