Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq58 136 2e-28 seq15 93.3 2e-15 >seq58 Length=3045158 Score = 136 bits (150), Expect = 2e-28 Identities = 391/590 (66%), Gaps = 16/590 (3%) Strand=Plus/Plus Query 3683 CAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAG 3742 ||||||| ||||| | || || ||| ||||| || | ||||| | ||||| || | Sbjct 2382471 CAAGGAGAGAGAGATCAAGGAGAAGGGGAGATTCTTTGCCATGATGGCATGGGAGCTACG 2382530 Query 3743 AGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGG 3802 ||||||||| || || || ||||||| |||| ||| |||||| || ||| | || Sbjct 2382531 AGAGTATTTCGTGGTGACCGAACACCTCATCAAGACCCATTTTGTTCCGTTATTTCACGG 2382590 Query 3803 ACTCACCATGGCAGATGATCTAAAATCTGTAACACGA-AAGATACTGGAGTGTACCACTG 3861 || || ||||| || || | || ||||| | ||| || || || | || || Sbjct 2382591 GCTTACGATGGCCGACGACCACAACTCTGTCAT-CGAGAAAATGCT----TCTAGCATCA 2382645 Query 3862 GTCACGGTCAGA-TC--GGTTACA--AGGTA-GTCAGCTTTGCTAATCACTTAGACTATG 3915 | ||| ||||| || | | || || | || | || ||||||||||| || ||| Sbjct 2382646 G--ACGCTCAGAATCCAGATGACCCCAGCCAAGTAAACTACGCTAATCACTTGGATTATT 2382703 Query 3916 AGAAATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTC 3975 ||||||||||| || ||| | || | | | || || ||| ||| ||||| | Sbjct 2382704 CAAAATGGAACAACCACCAGCGCGGCGAGGCTAACGATCCAGTATTCCGGGTCATGGGGC 2382763 Query 3976 AGTTCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAGTTTTG 4035 | ||||| || | ||||| || || | | ||| ||||| || || | || | Sbjct 2382764 AATTCCTGGGCCTCCCAAATCTTTTGGTGCGAACACATGAGTTTTTTGGCAAGTCCCTGA 2382823 Query 4036 TTTATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGAGGAAAGATCGTGAACAATA 4095 | || || || || || ||| | ||| ||| || |||| | | |||| | | Sbjct 2382824 TATACTACAAGGACCGGCCGGATTTGATGCGAGTTGAAAACGGAACGGTGGTGACCTCGA 2382883 Query 4096 CAGAACATATTGTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACGACAAAAGG 4155 |||| | || ||||| ||||| || || | ||||| || ||||| || ||||| |||| Sbjct 2382884 CAGAGGAGATGGTATGCTGGAAAGGCCAGCCAGGCGGCCTAGAAGGGCTCCGACAGAAGG 2382943 Query 4156 GATGGAGCGTCCTCAATCTTCTCGTCATCCTACGAGAGTCGAAGATCCGCAACACCCAAG 4215 | ||||| || | || ||||| || |||| | | || ||||| ||||| || | Sbjct 2382944 GGTGGAGTGTGGTGAACTATCTCGGGATAGAACGACAAGCTAAAATCCGAAACACGCAGG 2383003 Query 4216 TCAGAGTG-CTTGCTCAAGGTGACAACCAAGTGATTTGCACACGATACAA 4264 |||| ||| |||||||| || || ||||| | || |||||| ||||| Sbjct 2383004 TCAG-GTGTCTTGCTCAGGGGGATAACCAGATAATCTGCACATTGTACAA 2383052 >seq15 Length=2181291 Score = 93.3 bits (102), Expect = 2e-15 Identities = 183/261 (70%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 4008 ACTCATGATTTCTTCGAACAGAGTTTTGTT-TATTATGGTGAACGTCCTGATCTTATGAC 4066 |||||||| ||||| ||| || |||| | |||||| | || || || ||||| ||| Sbjct 562514 ACTCATGAGTTCTTTCAAC-GATCTTTGATCTATTATCGAGACCGCCCAGATCTCATGCG 562456 Query 4067 TGTTCAAGGAGGAAAGATCGTGAACA-ATAC---AGAACATATTGTATGTTGGAACGGTC 4122 ||| ||| || | | ||||||| | || || | | | | || ||||| || | Sbjct 562455 CGTTGAAGACGGCATAGTGGTGAACAGAGACCCGAGTA-AGAGAGCTTGCTGGAAAGGAC 562397 Query 4123 AACTGGGCGGACTTGAAGGACTACGACAAAAGGGATGGAGCGTCCTCAATCTTCTCGTCA 4182 | | || ||| | || | |||||||||||| |||||||| |||||||| |||||||| | Sbjct 562396 AGTTCGGGGGATTAGAGGAACTACGACAAAAAGGATGGAGTGTCCTCAACCTTCTCGTTA 562337 Query 4183 TCCTACGAGAGTCGAAGATCCGCAACACCCAAGTCAGAGTGCTT--GCTCAAGGTGACAA 4240 | | |||| || ||| | || || | || | || ||| |||||||| ||||| Sbjct 562336 TAGAAAGAGAATCATGGATTAGAAATACTCTTGT-ATAG-ACTTAAGCTCAAGGAGACAA 562279 Query 4241 CCAAGTGATTTGCACACGATA 4261 ||||| ||||| |||| ||| Sbjct 562278 TCAAGTCATTTGTACACAATA 562258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27668919183956