Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq58 87.8 1e-13 >seq58 Length=3045158 Score = 87.8 bits (96), Expect = 1e-13 Identities = 414/642 (64%), Gaps = 23/642 (4%) Strand=Plus/Plus Query 7264 AACAAATCAACGATGAGGGTCTCGAT----ATCAACGCCTTGATAATAGGCTTAAGAGAG 7319 ||| ||||||||| | || || ||| | ||| ||| |||| | | | |||| Sbjct 2382416 AACGAATCAACGAGCACGGACTAGATCCAGAACAA----TTGGTAATCGCCCTCAGAGCC 2382471 Query 7320 AAAGAAAGAGAAATCAAGATCAATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGA 7379 || || ||||| |||||| || || |||||||| | ||||| | ||||| ||||| Sbjct 2382472 AAGGAGAGAGAGATCAAGGAGAAGGGGAGATTCTTTGCCATGATGGCATGGGAGCTACGA 2382531 Query 7380 GATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCCTCTTTTATGGA 7439 || ||||| || | || || | || || || |||||||||||||| | ||| | || Sbjct 2382532 GAGTATTTCGTGGTGACCGAACACCTCATCAAGACCCATTTTGTTCCGTTATTTCACGGG 2382591 Query 7440 CTGACAATGGCTGATGATATGACAACAGTAGTACGCAAGATGATG--GAAAACACCAG-T 7496 || || ||||| || | | ||||| | || | ||| ||| | || ||| Sbjct 2382592 CTTACGATGGCCGACG--ACCACAACTCT-GTCATCGAGAAAATGCTTCTAGCATCAGAC 2382648 Query 7497 GGACAGGGTTCTGATGATTATGAGCACATAGGAATT--GCCAATCACTTGGATTATGAAA 7554 | ||| | | ||||| ||| || || | || ||||||||||||||| || Sbjct 2382649 GCTCAGAATCCAGATGA-CCCCAGC-CAAGTAAACTACGCTAATCACTTGGATTATTCAA 2382706 Query 7555 AGTGGAATAATCACCAAAGATACCAATCTACAGAACCTGTATTCACAGTCATGGGCAAAT 7614 | ||||| || ||||| | | | ||| || || |||||| |||||||| ||| Sbjct 2382707 AATGGAACAACCACCAGCGCGGCGAGGCTAACGATCCAGTATTCCGGGTCATGGGGCAAT 2382766 Query 7615 TCCTCGGATATCCGAATTTAATTGCGAGAACTCATGAGTTCTTCGAGAAAAGCTTCATTT 7674 |||| || || ||| | | | | |||| |||||||| || | || | | || | Sbjct 2382767 TCCTGGGCCTCCCAAATCTTTTGGTGCGAACACATGAGTTTTTTGGCAAGTCCCTGATAT 2382826 Query 7675 ACCACGGCGGTAGAGCAGACTTAATGAAGATCTCCAACGGCAACATAGTTAACAAGGATC 7734 || || | | | || || ||| || | || | ||| | | || || | Sbjct 2382827 ACTACAAGGACCGGCCGGATTTGATG-CGAGTTGAAAACGGAACGGTGGTGACCTCGA-C 2382884 Query 7735 CCAGTAAGATGGTATGCTGGCAGGGCCAGAAGGGCGGATTGGAAGGACTTCGACAAAAGG 7794 || |||||||||||||| | |||||| ||||| | ||||| || ||||| |||| Sbjct 2382885 AGAG-GAGATGGTATGCTGGAAAGGCCAGCCAGGCGGCCTAGAAGGGCTCCGACAGAAGG 2382943 Query 7795 GGTGGAGCATATTGAATCTAT-TAGTCATTCGAAGGGAAGGACAAGACCGGAACACCCGA 7853 ||||||| | |||| |||| | | || | | ||| || ||| ||||| | Sbjct 2382944 GGTGGAGTGTGGTGAA-CTATCTCGGGATAGAACGACAAGCTAAAATCCGAAACACGCAG 2383002 Query 7854 ATCCGATGCTTAGCTCAAGGAGATAATCAGGTTATCTGTACA 7895 || | || | ||||| || ||||| ||| | ||||| ||| Sbjct 2383003 GTCAGGTGTCTTGCTCAGGGGGATAACCAGATAATCTGCACA 2383044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39073108841828