Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq58 91.5 1e-14 >seq58 Length=3045158 Score = 91.5 bits (100), Expect = 1e-14 Identities = 302/467 (65%), Gaps = 16/467 (3%) Strand=Plus/Plus Query 5936 ACAAACTGGCCAGAGTTTCTTCAAAGAGTGAATGATGACGGGATACCTAGAGATCAGCTG 5995 || || |||| ||||| || ||| || | || || |||| || | ||| || || Sbjct 2382394 ACGAATTGGCGGGAGTTCCTCCAACGAATCAACGAGCACGGACTAGATCCAGAACAATTG 2382453 Query 5996 GTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGCGCTTCTTCTCATTG 6055 || |||| || | || ||||| | ||| | ||| | || ||| | ||||| | || Sbjct 2382454 GTAATCGCCCTCAGAGCCAAGGAGAGAGAGATCAAGGAGAAGGGGAGATTCTTTGCCATG 2382513 Query 6056 ATGTCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATCAAGCTTCACTAT 6115 ||| ||||| | | ||||| ||||||||||| || || |||| |||||| || | | Sbjct 2382514 ATGGCATGGGAGCTACGAGAGTATTTCGTGGTGACCGAACACCTCATCAAGACCCATTTT 2382573 Query 6116 GTTCCCCT-TTTCTCAGGCCTGACTATGGCGGATGATCTAACCACAGTCATCACCAAA-- 6172 ||||| | |||| | || || || ||||| || || | | | | |||||| ||| Sbjct 2382574 GTTCCGTTATTTCAC-GGGCTTACGATGGCCGACGACCACAACTCTGTCATCGAGAAAAT 2382632 Query 6173 --TTATTGGACCGGACCCAAGGA---CAGGGAGGTACATCGTATGAAAATATCTGCATCG 6227 || | | | | ||| | || ||| || | | ||| || || Sbjct 2382633 GCTTCTAGCATCAGACGCTCAGAATCCAGATGACCCCAGCCAAGTAAACTA-------CG 2382685 Query 6228 CCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCGCCAG 6287 | |||||| | |||||| ||||||||||| || || || ||||| | | |||| Sbjct 2382686 CTAATCACTTGGATTATTCAAAATGGAACAACCACCAGCGCGGCGAGGCTAACGATCCAG 2382745 Query 6288 TGTTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGGACCCATGAGT 6347 | ||| |||| ||||| |||||||| || ||||| || | | | | || ||||||| Sbjct 2382746 TATTCCGGGTCATGGGGCAATTCCTGGGCCTCCCAAATCTTTTGGTGCGAACACATGAGT 2382805 Query 6348 TCTTTCAACAAAGCTTAATATACTACAATGGTAGGCCCGATCTCATG 6394 | ||| | | | ||||||||||| | |||| ||| | ||| Sbjct 2382806 TTTTTGGCAAGTCCCTGATATACTACAAGGACCGGCCGGATTTGATG 2382852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34548550992156