Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031327.1 Length=10588 Score E Sequences producing significant alignments: (Bits) Value seq100 223 2e-54 seq3825 93.3 3e-15 >seq100 Length=1779872 Score = 223 bits (246), Expect = 2e-54 Identities = 492/735 (67%), Gaps = 2/735 (0%) Strand=Plus/Plus Query 8574 CTGTACAAAAAACAAGGAATGCGCCCGCGGAGACTGACACGTCAAGATTTCATCAACAAT 8633 |||| |||| || |||| || ||||||| |||| || | || |||||||| ||| Sbjct 212302 CTGTTCAAAGAAAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATCAAGAAT 212361 Query 8634 GTCCGTTCAGATGCAGC-AGTGGGTGGTTGGGCTAATGACATGACTTGGTCAGATGTTGA 8692 ||||| || ||||| || | ||||| | | || || ||| | ||||| | | || Sbjct 212362 GTCCGATCGGATGCTGCCATTGGGTCATGGAGCCAA-GACGTCCCTTGGACCAAGGTGAC 212420 Query 8693 GGCTGCAATCACGGATCCACTATTCTGGGAGATGGTTGATAGAGAGAGGCAACTCCATCT 8752 |||| ||| || || | || ||||| | || | | || || ||||||| || Sbjct 212421 CACTGCCGTCAATGACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACTCCACCT 212480 Query 8753 CTCGGGAGATTGTGAACTGTGCGTTTATAACACCATGGGGAAGAAAGAAAAGAAGCCGGC 8812 | || || |||| ||||||| || |||||||||||||| ||||| ||| | ||| | Sbjct 212481 GGCCGGGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGAC 212540 Query 8813 CATCTTAGGCAAAGCGAAGGGCTCTCGGACCATTTGGTATATGTGGCTAGGCAGTAGATT 8872 ||| || | |||| || || ||||||||| ||||||||||||| || ||| ||| Sbjct 212541 CATAGCTGGGGAGCCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATA 212600 Query 8873 CTTGGAGTACGAAGCCCTAGGATTCTTGAACCAGGACCATTGGGTGTCGCGCGACCACTT 8932 |||| || || ||| | || ||| | ||| | ||||||||||| | || || | || Sbjct 212601 TCTGGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTT 212660 Query 8933 GCCATGTGGCGTCGGAGGCGTCGGGGTCAATTACTTCGGAAACTACCTGAAAGAAATAGC 8992 || | ||||| ||||| |||| || || ||||| || | ||| || ||||||||| Sbjct 212661 CCCGGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGC 212720 Query 8993 AGGGAAGGGAAGATGGCTCATAGCTGATGATGTGGCAGGATGGGACACGCGCATAACGGA 9052 || |||| | || | || ||||| | || || |||||||| ||||| | | Sbjct 212721 TTCAAAAGGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCA 212780 Query 9053 ATCAGACATTGAAGATGAAAGGGCTTTGTTGCTGTCCTTAGTCACAGACCCGTATCACAT 9112 | || | | || ||| | || | || || | || || || | Sbjct 212781 GGCGGATTTGGCCGACGAAGAGTTCTTCATCCTCAACTCGATTGAGGATGATTACCATAG 212840 Query 9113 GGCCCTGATTGATTCAATCTTCACGATGGCTTACCGCAACATAGTGGCTCTTTTTCCTCG 9172 || ||| || || || | | | || |||| || || ||||| || ||||| || Sbjct 212841 AGCTCTGGCGGAGTCGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTCCCCG 212900 Query 9173 GAACCACAAGAGATTTGGTAGTGGGACTGTGATGGATGTGGTGTCTCGCACAGATCAACG 9232 | ||| ||| || ||||| || || ||||||||||| || || | ||||| || Sbjct 212901 AACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCGGATCAGCG 212960 Query 9233 TGGGTCGGGCCAAGTGGTCACATATGCCTTGAATACAATAACCAACGCTAAAGTCCAACT 9292 || ||||| || ||||| |||||||||||||| ||||| ||||| | || || || | Sbjct 212961 AGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAAGGTTCAGAT 213020 Query 9293 TGGCCGATCACTTGA 9307 ||||| | | ||||| Sbjct 213021 TGGCCAAACCCTTGA 213035 Score = 111 bits (122), Expect = 1e-20 Identities = 220/327 (67%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 9531 GTGGAGTTTTGTTCACACCACTTCCACCCTGTGAACCTCCAGGATGGCCGCGTCTTGATC 9590 || |||||||| || || |||||||| || | | ||| | ||||| | | ||| Sbjct 244199 GTTGAGTTTTGCTCCCATCACTTCCATCCACTCCATCTCAAAGATGGAAGGAAAATAATC 244258 Query 9591 GTCCCATGTCGCGAACAAAATGAAATCATTGGTCGCTCCCGACTACAGAAAGGAGGAATC 9650 || ||||| ||| | | | ||||||||||| | ||| | || |||||||| || Sbjct 244259 GTTCCATGCCGCCACGAGCACGAAATCATTGGGAGAAGTCGAGTCCAAAAAGGAGGGCTC 244318 Query 9651 GTGAGTGAGAGTGAAGGAGCCTGTCTGGCAAAAGCACATGGTCAGATGTGGGCCCTCTAC 9710 |||| ||| | || |||||| ||||||| || || || |||||||| || ||| Sbjct 244319 GTGACCATCCCAGAAAGTGCTTGTCTGTCAAAAGCCCACGGACAAATGTGGGCTCTGTAC 244378 Query 9711 TTTTTCCACCGTCGGGACATGCGATTGGCTTTTGCGGCCATCACGGCAAGTGTACCCTCA 9770 |||||||| || || || |||| ||| | || ||||| ||| || || || Sbjct 244379 TTTTTCCATCGGCGTGATCTGCGGGTGGGGTACGCAGCCATACATGCATCCGTTCCAACA 244438 Query 9771 CACTGGTTTCCAAAGGGCAGGACATCATGGTCAGTCCACCAAAAACATGAATGGATGACC 9830 | ||| | ||| |||| | |||| ||||||| || | || ||||||||| Sbjct 244439 GATTGGGTCCCAGAGGGGA---------GGTCCATCCACCAGCAATACGAGTGGATGACC 244489 Query 9831 ACCAACGACATGCTGGAGGTGTGGAAC 9857 || | ||||||| || ||||||||| Sbjct 244490 ACGGAAAACATGCTTGATGTGTGGAAC 244516 >seq3825 Length=1042611 Score = 93.3 bits (102), Expect = 3e-15 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 9693 CAGATGTGGGCCCTCTACTTTTTCCACCGTCGGGACATGCGATTGGCTTTTGCGGCCATC 9752 ||||||||||| | ||||| |||||| | | ||| || | || | || ||||||||| Sbjct 957453 CAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCCATC 957512 Query 9753 ACGGCAAGTGTACCCTCACACTGGTTTCCAAAGGGCAGGACATCATGGTCAGTCCACCAA 9812 | | ||||| || | ||||| || | ||| | || || ||||| | || ||| Sbjct 957513 GCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCATCAA 957572 Query 9813 AAACATGAATGGATGACCACCAACGACATGCTGGAGGTGTGGAACGACGTATGGATTCGC 9872 || |||||||||||| || | |||||||| || ||||| ||| ||||| | Sbjct 957573 AACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGATCCAA 957632 Query 9873 AACAACCCCTGGATGAGAGAGAAAGA 9898 ||||||| ||||||| | | ||||| Sbjct 957633 GACAACCCATGGATGAAACATAAAGA 957658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33764592948896