Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq58 93.3 3e-15 seq15 80.6 2e-11 >seq58 Length=3045158 Score = 93.3 bits (102), Expect = 3e-15 Identities = 315/481 (65%), Gaps = 26/481 (5%) Strand=Plus/Minus Query 4492 GTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCC 4551 ||| |||||||| || || |||| || ||||| ||||| | || ||||| || Sbjct 2382831 GTAGTATATCAGGGACTTGCCAAAAAACTCATGTGTTCGCACCAAAAGATTTGGGAGGCC 2382772 Query 4552 AAGAAACTTTCCCATCACATCAAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATT 4611 || || | ||||| || ||||| |||| || || | | | || || ||||| || Sbjct 2382771 CAGGAATTGCCCCATGACCCGGAATACTGGATCGTTAGCCTCGCCGCGCTGGTGGTTGTT 2382712 Query 4612 CCATTTGCTATAATCAAAGTGATTGGCGA----TACA--GATGTTCTCGTACCCTTCACT 4665 |||||| |||||| |||||||| ||| ||| | || || | || | | Sbjct 2382711 CCATTTTGAATAATCCAAGTGATTAGCGTAGTTTACTTGGCTGGGGTCAT---CTGGA-T 2382656 Query 4666 TCCTTGACC---TGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATA-TCATCTG 4721 || ||| | ||| | | | | |||||||| ||||| | ||| | || || | Sbjct 2382655 TC--TGAGCGTCTGATGCTAGA---AGCATTTTCTCGATGACAG-AGTTGTGGTCGTCGG 2382602 Query 4722 CCATAGTTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTA 4781 |||| || || || | ||| || |||||||| || |||||||| |||||||| || | | Sbjct 2382601 CCATCGTAAGCCCGTGAAATAACGGAACAAAATGGGTCTTGATGAGGTGTTCGGTCACCA 2382542 Query 4782 CAAAATACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCTTGATCT 4841 | ||||||||||||| |||| | || | ||| | ||||| || |||||||| Sbjct 2382541 CGAAATACTCTCGTAGCTCCCATGCCATCATGGCAAAGAATCTCCCCTTCTCCTTGATCT 2382482 Query 4842 CTCGCTCTTTTCCTTTAAGTCCTATGATGAGATCCTCAAGAGTTAGTCCATTGTCATTGA 4901 ||| ||| || || | || | || | | | || || |||||| | || |||| Sbjct 2382481 CTCTCTCCTTGGCTCTGAGGGCGATTACCAATTGTTCTGGATCTAGTCCGTGCTCGTTGA 2382422 Query 4902 CTTCTTGCAGGAACTTTTTCCACTCCGTTGCAGGTTTT---TGGAGAAATGATTCCAGAA 4958 | ||| ||||||| ||| | ||| ||||| | | ||| | |||||||||| Sbjct 2382421 TTCGTTGGAGGAACTCCCGCCAATTCGT---AGGTTCTCGCTCAAGATAGGATTCCAGAA 2382365 Query 4959 C 4959 | Sbjct 2382364 C 2382364 >seq15 Length=2181291 Score = 80.6 bits (88), Expect = 2e-11 Identities = 175/259 (68%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 4273 ATAATTTGTGCAGACCACCTGATTGTCCCCTTGAGCCAGAACTTTA-ACAAATGTATTGT 4331 ||| | ||| || | || |||||||| |||||||| || | || |||| ||||| Sbjct 562257 ATATTGTGTACAAATGACTTGATTGTCTCCTTGAGCTT-AAGTCTATACAAGAGTATTTC 562315 Query 4332 TGCTTTTGGATGCTCTGTTGATGGCGAGAAGGTTTACAATACTCCATCCCTTTTGGCGCA 4391 | | ||| |||| | || |||||||||| | | ||||||||| ||||| || | Sbjct 562316 TAATCCATGATTCTCTTTCTATAACGAGAAGGTTGAGGACACTCCATCCTTTTTGTCGTA 562375 Query 4392 ATCCCTCTAATCCCCCCAATTGACCTTGCCAGCAATACAGTTGTCCCGG---TTTATTGA 4448 | ||||||||||||| || || |||| ||||||| | | ||| | | || | Sbjct 562376 GTTCCTCTAATCCCCCGAACTGTCCTTTCCAGCAAGCTCTCTTACTCGGGTCTCTGTTCA 562435 Query 4449 CGATTCTTCCATCATGACAGCGCAGTTGATCAGGTCTATCCAGGTAATATATCAGTGATT 4508 | | | | || || | | ||||| |||| || | || | ||||| |||| ||| Sbjct 562436 CCACTATGCCGTCTTCAACGCGCATGAGATCTGGGCGGTCTCGATAATAGATCAAAGATC 562495 Query 4509 TTTCAAAGAATTCATGAGT 4527 || |||||| |||||||| Sbjct 562496 GTTGAAAGAACTCATGAGT 562514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36068469647456