Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_033694.1 Length=10095 Score E Sequences producing significant alignments: (Bits) Value seq100 194 1e-45 seq2228 147 1e-31 seq3825 113 3e-21 >seq100 Length=1779872 Score = 194 bits (214), Expect = 1e-45 Identities = 662/1016 (65%), Gaps = 28/1016 (3%) Strand=Plus/Plus Query 8254 GAAAATCGGAAAACATGGTTTGTGGACAACGAACATCCA-TATGTGTCATTTAACTACCA 8312 ||||||| | || |||||| | ||||| ||||| || || | | ||||| ||||| Sbjct 212011 GAAAATCTAAGCACTTGGTTTTTTGACAA-GAACAACCCCTACCAGACTTTTAAGTACCA 212069 Query 8313 TGGATCCTTCGTGACTGATGAGGTGACAGCGGGCGGACAAACAACAAATCC-CTTGATTA 8371 ||| || | |||||| ||||| || | || || || ||||| || || |||| Sbjct 212070 TGGTTCGTACGTGACAGATGACGTCAAAGTTGGTGGTCAAACTGTCAACCCTCTTGTCCG 212129 Query 8372 GACGCGTTATGTGGCCATGGGACTTTCTGTCTCGGGTGACAACCTTTATGATGACCGATG 8431 || | |||||||||| ||||| | | || |||| ||| ||||||||||| Sbjct 212130 GAAGA-TTATGTGGCCTTGGGAAGCCGTTGGAGGAGTAACAAACTTCATGATGACCGACA 212188 Query 8432 TTTCAACGTATGCCCAACAAAAGGTGCTGCGTGAAAAAGTGGACACT---GTCTCTGAGG 8488 | |||||||| ||||||||||||| || || || || || | ||| ||| |||| Sbjct 212189 TCTCAACGTACTCCCAACAAAAGGTTCTCCGGGAGAAGGTAGGCACCCCCGTCCCTGAA- 212247 Query 8489 AGCCCGACGAGCGAATGAAAGCAATTAACAGACTCATCATGACACACTTCGTGAAAATGT 8548 ||| || | | ||| | || || ||||||| ||| | || ||| Sbjct 212248 --CCCAGGGAACAGGTTAAAATGGTCAATAGGAAAATCATGAAGCACATGGTCCGCCTGT 212305 Query 8549 TCAAGCGGCGCGGGCTGAAACCGAGGGTGTTGACACCACAAGACTACATGAATAATGTCC 8608 |||| |||||||||||| || | ||||| | |||| ||| || ||||||| Sbjct 212306 TCAAAGAAAAAGGGCTGAAACCGCGGATTTTGACGTGTGACGACTTCATCAAGAATGTCC 212365 Query 8609 AAGCCAACGCAGCCATAGGAGGATGGAGCGAAGTAATGGATTGGCAAAACGTGCGCGATG 8668 | | | || ||||| || ||||||| ||| | |||| || ||| | || Sbjct 212366 GATCGGATGCTGCCATTGGGTCATGGAGCCAAGACGTCCCTTGGACCAAGGTGACCACTG 212425 Query 8669 CTTTGGCAGATCAACGATTCTGGGACATGGTAGATAACGAGAGGGCCTTACACTTGCGTG 8728 | | || | || || ||||| | ||| | || || | ||| || | Sbjct 212426 CCGTCAATGACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACTCCACCTGGCCG 212485 Query 8729 GTGACTGTGAGCTTTGCATCTATAACACGATGGGAAAGAAAGAAAAGAAGCCATC--TGC 8786 | ||||||| | | ||| | || ||||| ||||| || ||||| ||| | || | | Sbjct 212486 GGGACTGTGCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATAG 212545 Query 8787 CTTTGGCACTGCGAAAGGTTCACGCACCATCTGGTATATGTGGCTGGGTAGCCGTTATTT 8846 || || | ||||||| || || ||||| |||||||||||||||| || || ||| | Sbjct 212546 CTGGGGAGC--CGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCT 212603 Query 8847 AGAGTACGAGGCTTTAGGATTCTTGAACGAAGATCATTGGGTTGCACGAGAAAACTTTCC 8906 || || ||||| || || ||| | |||||||| |||||||| || || ||||| || || Sbjct 212604 GGAATATGAGGCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCC 212663 Query 8907 ATGTGGAGTCGGTGGCGTCGGCGTTAACTATTTTGGATATTACCTGAAGGAAATAGCCGG 8966 | || || || || ||||||| ||||| ||||| |||||| || |||||||| Sbjct 212664 GGGCGGCGTGGGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAGCTTC 212723 Query 8967 GGGAGGCCGGTGGCTTATCGCAGACGATG---TCGCGGGATGGGACACGAGAATAACCCA 9023 ||| || || ||| | ||||| | || || |||||||| | || | || Sbjct 212724 AAAAGGAAAGT---TTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCA 212780 Query 9024 AGGAGATCT---AGATGATGAGCTGTTCATGTTAACCGAGCTTGCCCCAACCACATACCA 9080 | ||| | || || ||| | ||||| | | | | ||| | | ||||| Sbjct 212781 GGCGGATTTGGCCGACGAAGAGTTCTTCATCCTCAACTCGATTG--AGGATGA-TTACCA 212837 Query 9081 CA-AGAAATTGATAACTGCGACAATGACGTTGGCTTATAAAAACATAGTGGCCTTATTCC 9139 | || | | | | || |||| || || || |||| || |||||| | || | Sbjct 212838 TAGAGCTCTGGCGGAGT-CGGTCATGAAATTTGCCTACCAAAATATTGTGGCCCTGTTTC 212896 Query 9140 CTAGAAATCATCCGATGTACCGAAGTGGAACTGTTCTTGATGTGTTGTCTCGAACGGATC 9199 | ||| ||| | | | | |||||||| || | |||||| | || ||| |||||| Sbjct 212897 CCCGAACCCATTCTGAATTCGGGAGTGGAACGGTCATGGATGTGGTTTCCCGATCGGATC 212956 Query 9200 AGCGTGGGTCGGGCCAGGTGACAACATACGCTTTGAACACTGTGACTAATGGAAAG 9255 |||| || ||||| |||||| ||||| || |||||||| | || ||||||||| Sbjct 212957 AGCGAGGCTCGGGGCAGGTGGTGACATATGCCTTGAACACAATCACCAATGGAAAG 213012 >seq2228 Length=1444863 Score = 147 bits (162), Expect = 1e-31 Identities = 366/553 (66%), Gaps = 12/553 (2%) Strand=Plus/Plus Query 7509 CTACAAAGTCAGAGGCGTGAATGAAACTGATAAAGGAGCCTACGTGTCGCGAGGTGGTTT 7568 ||||||| | |||||||||| |||||| ||| | ||| ||||| || || || || Sbjct 1368047 CTACAAATCCCGAGGCGTGAACGAAACTCCCCGAGGTGACTATGTGTCTCGTGGGGGATT 1368106 Query 7569 AAAAATGAACGAGATTATCAACAAGCATGCGTGGGAACCTCGAGGAGTTGTCGTTGACCT 7628 |||||| |||| || |||| || | | | ||| ||| |||||||||||| Sbjct 1368107 GAAAATGGACGAAATCATCAGGAAATACGGCTTTCGACCAGCTGGACGTGTCGTTGACCT 1368166 Query 7629 GGGATGTGGACGAGGAGGTTGGTCCCAGCGCTTGGTGATGGATTACCGCGT----CGCTG 7684 ||||||||||||||||| |||| ||| | |||||||| | || || ||| Sbjct 1368167 TGGATGTGGACGAGGAGGACGGTCGCAGAGGGCAGTGATGGAAGAACGAGTTATGCGC-- 1368224 Query 7685 AAGTAAGAGGATACACACTTGGAGGCAAAGAACGTGAGAATCCCCAACCGTTCCAAACGA 7744 || | ||| ||||| ||||| || ||||||||| | |||||| |||| |||| Sbjct 1368225 --GTGACAGGGTACACCCTTGGGGGAGTAGAACGTGAAGAACCCCAAAAGTTCATAACGT 1368282 Query 7745 AAGGATATAACTTGGCGAATTTGAAGGCTGGAGTTGACGTCTATAAAATGGAGCCAGTGA 7804 | || || ||| | | | | ||| | | | |||| || | || ||| Sbjct 1368283 ATGGTTACAACCTAGTCACCCTAAAGAGTCGGACAAATGTCTTCAAGCTTGAACCAACTC 1368342 Query 7805 ATTGTAACACCATAATTTGCGACATAGGTGAGAGTGACCC--GCGTCCTGAAGTTGAAAA 7862 ||| | || | |||| ||||| || |||||||| || ||| |||| ||||| Sbjct 1368343 TGTGTGAAACTGTCCTTTGTGACATCGGGGAGAGTGATCCTGATTTCCGGAAG--GAAAA 1368400 Query 7863 AACTCGAACGCTGAAGGTTTTGGGAATGCTGGAGAAATGGCTGGAAGTCAATCCAAACGC 7922 ||| |||||||| || | | | || |||| ||| || | |||||| | || Sbjct 1368401 AACCAGAACGCTGGTCGTCCTTGATGTTCTCGAGAGGTGGTTGAAGACCAATCCGGAGGC 1368460 Query 7923 CTCTTTTTGCTGCAAAGTGCTATCACCTTATCACTTGGACGTGCTTCGAAAGTTAGAGTC 7982 | || || | || || |||| || |||| |||| ||| | || ||| | || | Sbjct 1368461 CCAGTTCTGTTTTAAGGTCCTATGCCCATATCCGGTGGAGGTGATGCGGAAGCTTGAAAC 1368520 Query 7983 GCTGCAACACAAGTATAACGGGCGGCTGGTTCGACTGTCTTACAGTCGGAACTCAACAGC 8042 |||||||| | || | |||||| ||||||||||||| || | ||||||||||| Sbjct 1368521 TCTGCAACATACCTACAGTGGGCGGTTGGTTCGACTGTCCACAAGCAGAAACTCAACAGC 1368580 Query 8043 AGAAATGTATTAT 8055 |||||||| ||| Sbjct 1368581 TGAAATGTACTAT 1368593 >seq3825 Length=1042611 Score = 113 bits (124), Expect = 3e-21 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 9661 GCGCAGATGTGGGCCCTTTACTTCTTCCATCGGCGAGACTTACGGATTGGATTCGCGGCC 9720 |||||||||||||| | ||||||||||| | ||||||| || | |||||||||||| Sbjct 957450 GCGCAGATGTGGGCTTTGTACTTCTTCCACAGAAGAGACTTGAGGTTAGGATTCGCGGCC 957509 Query 9721 ATCACATCAATTGTGCCTATCAACTGGGTGCCGACGGGCAGGATATCATGGTCTATCCAC 9780 ||| | || | ||| ||| | | ||| | || ||| | | || ||||| || || Sbjct 957510 ATCGCTTCTAGTGTTCCTGTGGAATGGTTCCCTGAAGGCCGAACGTCGTGGTCCATTCAT 957569 Query 9781 CAGAACGCAGAGTGGATGACGACTGAGGATATGCTAACGGTTTGGAACAACGTGTGGATT 9840 || ||| || |||||||| || ||||| ||||| || || ||||| ||| ||||| Sbjct 957570 CAAAACTGTGAATGGATGACAACAGAGGACATGCTCACTGTATGGAATCGCGTTTGGATC 957629 Query 9841 AGGGACAATCCGTGGATGAGAGGAAAAGAA 9870 ||||| || ||||||| | |||||| Sbjct 957630 CAAGACAACCCATGGATGAAACATAAAGAA 957659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32187077376132