Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_034018.1 Length=10293 Score E Sequences producing significant alignments: (Bits) Value seq100 78.8 6e-11 >seq100 Length=1779872 Score = 78.8 bits (86), Expect = 6e-11 Identities = 236/364 (65%), Gaps = 9/364 (2%) Strand=Plus/Plus Query 8863 GATCCCAAGTTTTGGGAACTGGTAGATGAAGAAAGGAAAGCCCACTTGAGAGGAGAGTGC 8922 || ||| |||||||||||| ||| | ||||| ||| |||| || || || || Sbjct 212434 GACCCCCGGTTTTGGGAACTAGTAAACCGGGAAAGAAAACTCCACCTGGCCGGGGACTGT 212493 Query 8923 CACACCTGCATCTACAACATGATGGGAAAACGTGAGAAGAAGCCAGGGGAATTCGGAAAG 8982 | ||| | ||||||| ||||| ||| |||||| | || | || || Sbjct 212494 GCGATGTGCGTGTACAACACCATGGGGAAAAAAGAGAAGCAACCGACCATAGCTGGGGAG 212553 Query 8983 GCAAAAGGAAGCCGAGCCATCTGGTACATGTGGCTCGGAGCCCGATTCTTGGAGTTTGAA 9042 | |||||| ||| |||| |||| |||||||| ||| |||| |||| | ||| Sbjct 212554 CCGAAAGGATCCCGGACCATTCGGTATATGTGGCTGGGAAGTCGATATCTGGAATATGAG 212613 Query 9043 GCCCTTGGATTTCTCAACGAAGATCACTGGATGAGCAGAGAAAACTCAGGAGGCGGGGTA 9102 ||| | || || ||||||||||| || ||| | | | ||||| | ||||| || Sbjct 212614 GCCTTGGGCTTCCTCAACGAAGACCATTGGGTAGCCCGTGAAAATTTCCCGGGCGGCGTG 212673 Query 9103 GAAGGACTTGGCCTGCAGAAATTGGGCTACGTCTTGAGAGAAGTAGGAAAGAAGGCAGGA 9162 | ||| || ||| | | | || ||||| |||| |||| ||| || | Sbjct 212674 GGAGGTCTCGGCGTAAACTACTTTGGCTATTACTTGTCAGAAATAG------CTTCAAAA 212727 Query 9163 GGAAAGATATAC---GCTGATGACACGGCCGGTTGGGACACACGGATTACCATGGCGGAT 9219 |||||| | | | || ||||||| || || |||||||| || |||| ||||||| Sbjct 212728 GGAAAGTTTTTCGTTGCCGATGACATAGCTGGCTGGGACACTCGCATTAGTCAGGCGGAT 212787 Query 9220 TTGG 9223 |||| Sbjct 212788 TTGG 212791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32820643468236