Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_000943.1 Length=11014 Score E Sequences producing significant alignments: (Bits) Value seq570 87.8 1e-13 seq296 84.2 2e-12 >seq570 Length=1853759 Score = 87.8 bits (96), Expect = 1e-13 Identities = 186/270 (69%), Gaps = 16/270 (6%) Strand=Plus/Plus Query 9051 ATGGGCAAACGTGAGAAAAAACCCGGAGAATT-TGGAAAGGCCAAGGGAAGCAGAGCCAT 9109 ||||||||| || |||||| |||| | | |||| | || ||||| | | || Sbjct 257990 ATGGGCAAAAAGGAAAAAAAAACCGGGGGTTGCTGGAGAAGCTAAGGGGTCGCGTACGAT 258049 Query 9110 CTGGTTCATGTGGCTGGGAGCCAGATTCTTGGAGTTTGAAGCTCTAGGATTCCTCAATGA 9169 |||| ||||||||| || ||| ||| | || ||||||||||| || |||||||| | Sbjct 258050 TTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTTGGCTTCCTCAACGC 258109 Query 9170 AGACCATTGGATGAGTAGAGAGAA-TTCAGGAGGAGGAGTTGAAGGAGCTGGTATTCA-G 9227 ||||| ||| | ||| | ||||| ||| | |||||||| | |||| ||| | | Sbjct 258110 TGACCACTGGGTTAGTCGCGAGAACTTCCCG-GGAGGAGTAGGGGGAGTTGGGGTCAACT 258168 Query 9228 AAGCTGGGATACATCTTGAGAGATGTGGCTCAAAAGCCTGGAGGGAAAATTTAT----GC 9283 | ||||| || |||| ||| | || ||||| |||||||||| | || Sbjct 258169 ACTTTGGGAATTAT-TTGAAAGACATCGC-AAAAAG------GGGAAAATTTTTATTCGC 258220 Query 9284 CGATGACACAGCTGGTTGGGACACCCGCAT 9313 |||||||| ||||| |||||||| || || Sbjct 258221 CGATGACATTGCTGGATGGGACACTCGTAT 258250 >seq296 Length=5246318 Score = 84.2 bits (92), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 9042 TATAACATGATGGGCAAACGTGAGAAAAAACCCGGAGAATTTGGAAAGGCCAAGGGAAGC 9101 ||||| | ||||| ||| || || || ||||||| ||| |||| |||||| Sbjct 840623 TATAATACTATGGGGAAAAAAGAAAAGAAGCCCGGAGTTGCTGGTGAGGCAAAGGGATCT 840682 Query 9102 AGAGCCATCTGGTTCATGTGGCT-GGGAGCCAGATTCTTGGAGTTTGAAGCTCTAGGATT 9160 | | ||||||| |||||||| |||||| ||||||||||||| ||||| || | || Sbjct 840683 CGGACTATCTGGTATATGTGGCTCGGGAGC-AGATTCTTGGAGTACGAAGCGCTGGCGTT 840741 Query 9161 CCTCAATGAAGACCATTGGATGAGTAGAGAGAATTCAGGAGGAGGAGTTG 9210 ||| || | |||||| ||| | || | ||||||| |||||||||| Sbjct 840742 CCTGAACGCAGACCACTGGGTCAGCCGTGAGAATTTCCCCGGAGGAGTTG 840791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35128637668520