Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_002640.1 Length=10649 Score E Sequences producing significant alignments: (Bits) Value seq65 84.2 1e-12 seq570 80.6 2e-11 >seq65 Length=4361017 Score = 84.2 bits (92), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 9803 GAGCTTAAGAGAAACAGCCTGCCTGGGCAAAGCTTACGCCCAGATGTGGTCGCT-TATGT 9861 ||||||| || | |||||| ||| ||| || ||||| || |||||| | || ||| | Sbjct 2220024 GAGCTTAGCTGAGAGCGCCTGCATGGCCAAGGCCTACGCACAAATGTGGGCCCTATATTT 2219965 Query 9862 ACTTCCACAGAAGGGATCTGCGTTTAGCCTCCATGGCCATATGCTCAGCAGTTCCAACGG 9921 ||| ||| | |||||| | | || | | | || ||| || || |||| | | Sbjct 2219964 -CTTTCACCGTCGGGATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCTCTG 2219906 Query 9922 AATGGTTTCCAACAAGCAGAACAACATGGTCAATCCACGCTCATCACCAGTGGATGACCA 9981 | |||||||| | ||||| | ||||| |||||| |||| |||||||||||| Sbjct 2219905 ATTGGTTTCCTGTGGGGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGACCA 2219846 Query 9982 CTGAAGATATGCTCAAAGTGTGGAA 10006 |||| |||||||| ||||||||| Sbjct 2219845 CTGATGATATGCTACGAGTGTGGAA 2219821 >seq570 Length=1853759 Score = 80.6 bits (88), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 9803 GAGCTTAAGAGAAACAGCCTGCCTGGGCAAAGCTTACGCCCAGATGTGGTCGCT-TATGT 9861 ||||||| || | ||||| ||| ||| || ||||| || |||||| | || ||| | Sbjct 12457 GAGCTTAGCTGAGAGCGCCTGTATGGCCAAGGCCTACGCACAAATGTGGGCCCTATATTT 12398 Query 9862 ACTTCCACAGAAGGGATCTGCGTTTAGCCTCCATGGCCATATGCTCAGCAGTTCCAACGG 9921 ||| ||| | |||||| | | || | | | || ||| || || |||| | | Sbjct 12397 -CTTTCACCGTCGGGATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCTCTG 12339 Query 9922 AATGGTTTCCAACAAGCAGAACAACATGGTCAATCCACGCTCATCACCAGTGGATGACCA 9981 | |||||||| | ||||| | ||||| |||||| |||| |||||||||||| Sbjct 12338 ATTGGTTTCCTGTGGGGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGACCA 12279 Query 9982 CTGAAGATATGCTCAAAGTGTGGAACAGAGTGTGGA-TAGAAGACAACCC 10030 |||| |||||||| ||||||||| || |||| ||| | ||||||| Sbjct 12278 CTGATGATATGCTACGAGTGTGGAATGACGTTTGGATTAGCA-ACAACCC 12230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33960669664420