Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq1107 116 3e-22 seq1594 114 9e-22 seq1774 111 1e-20 >seq1107 Length=3620151 Score = 116 bits (128), Expect = 3e-22 Identities = 324/496 (65%), Gaps = 16/496 (3%) Strand=Plus/Minus Query 6240 AAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGG 6299 || ||| ||||| | ||| ||||||||| || | ||||| | ||| | | || Sbjct 2215026 AAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGA 2214967 Query 6300 GAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAAGGGA 6359 |||| ||||| | ||||| || ||||||| || || |||||||| | ||| | || Sbjct 2214966 GAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCACGGG 2214907 Query 6360 TTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGG 6419 | || ||||| ||||| | | | ||| || |||||||| | | | ||| Sbjct 2214906 CTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCGCAGCTTCAGATGCC 2214847 Query 6420 CAAGGCTTGGACGACTACTCATCTATATGCATT--GCGAACCACATTGATTATGAAAAAT 6477 || | ||| ||| | | | | | ||| ||||| ||| ||||||| ||| | Sbjct 2214846 CAGAACCCGGAAGAC--CCGAACCAAGTAAATTACGCGAATCACCTTGATTACTCAAAGT 2214789 Query 6478 GGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCT 6537 |||| || || || || ||| | || | || || ||| | ||||||||||||||| Sbjct 2214788 GGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCC 2214729 Query 6538 TAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATT 6597 | || ||| ||||| |||| ||||| ||||| || | || | |||| Sbjct 2214728 TGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATT 2214669 Query 6598 ATAACGGGAGGCCGGACCTGATGGATGTGAGAGGGGATTCTTTAGTG------AATACAA 6651 | || | |||||||||||||| |||| ||| ||| | | ||| | | Sbjct 2214668 ACAAAGACCGGCCGGACCTGATG------AGAGTGGAATCTGGAAAGGTCATCAATGCCA 2214615 Query 6652 CAGATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTTCGCAGAAAG 6711 | || || || || |||||||| || ||||| |||||| | |||||||| ||||| | Sbjct 2214614 CCGAAAACATCGTTTGCTGGGAGGGCCAAGCCGGCGGACTGGAAGGGCTACGACAGAAGG 2214555 Query 6712 GATGGAGTGTACTCAA 6727 |||||||||| |||| Sbjct 2214554 GATGGAGTGTGGTCAA 2214539 >seq1594 Length=5600000 Score = 114 bits (126), Expect = 9e-22 Identities = 335/507 (66%), Gaps = 12/507 (2%) Strand=Plus/Plus Query 6240 AAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGG 6299 |||||||| || | ||| ||| ||||||||| | ||||| ||||| |||| || Sbjct 3582709 AAAGAAAGGGAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCATGGGAATTCCGG 3582768 Query 6300 GAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAAGGGA 6359 |||| ||| || | || ||| | || |||||||| || ||||| || | || | || Sbjct 3582769 GAGTTCTTCGTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCCTTGTTTCATGGC 3582828 Query 6360 TTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGG 6419 |||| ||||||||||| | | | | ||| | |||||||||||| | | | ||| Sbjct 3582829 CTAACCATGGCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCTGCCTCCGATGCA 3582888 Query 6420 CAAGGCTTGGACGACTACTCATCTA--TATGCATTGCGAACCACATTGATTATGAAAAAT 6477 ||| || || | || | | | | ||| |||||| | || || |||| Sbjct 3582889 CAAAATCCAGAGGA--TCCCAACCAGGTCAACTATGCTAACCACCTAGACTACTCCAAAT 3582946 Query 6478 GGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCT 6537 ||||||| |||||||| |||| |||||| ||||| || || ||||| ||||| | Sbjct 3582947 GGAACAACCATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAATTTT 3583006 Query 6538 TAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAGTCAAGT--CTCATTTA 6595 | || ||| ||||| | || || || |||||| | |||| || || || Sbjct 3583007 TGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGG--AAGTCCCTGATCTA 3583064 Query 6596 TTATAACGGGAGGCCGGACCTGATG-GATGTGAGAGGGGATTCTTTAGTGAATACAACAG 6654 || || | || || ||||| ||| | ||| || | | | ||| |||||| Sbjct 3583065 CTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGGAAAGTCA-TAAATGCAACAG 3583123 Query 6655 ATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTTCG-CAGAAAGGA 6713 | | || || || ||| | || ||||||||||| ||| ||||| | || || |||||| Sbjct 3583124 AACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAG-AGGGCCTGCGCCAAAAAGGA 3583182 Query 6714 TGGAGTGTACTCAATTTACTGGTCATC 6740 ||||| || | || | |||| |||| Sbjct 3583183 TGGAGCGTTGTGAACTACCTGGGCATC 3583209 >seq1774 Length=2904822 Score = 111 bits (122), Expect = 1e-20 Identities = 323/496 (65%), Gaps = 16/496 (3%) Strand=Plus/Minus Query 6240 AAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGG 6299 || ||| ||||| | ||| ||||||||| || | ||||| | ||| | | || Sbjct 1686518 AAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGA 1686459 Query 6300 GAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAAGGGA 6359 |||| ||||| | ||||| || ||||||| || || |||||||| | ||| | || Sbjct 1686458 GAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCACGGG 1686399 Query 6360 TTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGG 6419 | || ||||| ||||| | | | ||| || |||||||| | | | ||| Sbjct 1686398 CTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCGCAGCTTCAGATGCC 1686339 Query 6420 CAAGGCTTGGACGACTACTCATCTATATGCATT--GCGAACCACATTGATTATGAAAAAT 6477 || | ||| ||| | | | | | ||| ||||| ||| | ||||| ||| | Sbjct 1686338 CAGAACCCGGAAGAC--CCGAACCAAGTAAATTACGCGAATCACCTGGATTACTCAAAGT 1686281 Query 6478 GGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCT 6537 |||| || || || || ||| | || | || || ||| | ||||||||||||||| Sbjct 1686280 GGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCC 1686221 Query 6538 TAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATT 6597 | || ||| ||||| |||| ||||| ||||| || | || | |||| Sbjct 1686220 TGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATT 1686161 Query 6598 ATAACGGGAGGCCGGACCTGATGGATGTGAGAGGGGATTCTTTAGTG------AATACAA 6651 | || | |||||||||||||| |||| ||| ||| | | ||| | | Sbjct 1686160 ACAAAGACCGGCCGGACCTGATG------AGAGTGGAATCTGGAAAGGTCATCAATGCCA 1686107 Query 6652 CAGATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTTCGCAGAAAG 6711 | || || || || |||||||| || ||||| |||||| | |||||||| ||||| | Sbjct 1686106 CCGAAAACATCGTTTGCTGGGAGGGCCAAGCCGGCGGACTGGAAGGGCTACGACAGAAGG 1686047 Query 6712 GATGGAGTGTACTCAA 6727 |||||||||| |||| Sbjct 1686046 GATGGAGTGTGGTCAA 1686031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35144637230220