Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_008604.2 Length=10837 Score E Sequences producing significant alignments: (Bits) Value seq296 134 1e-27 seq570 107 1e-19 seq65 104 2e-18 >seq296 Length=5246318 Score = 134 bits (148), Expect = 1e-27 Identities = 274/400 (69%), Gaps = 8/400 (2%) Strand=Plus/Plus Query 8704 TGCCGCCATTGGAGGGTGGAGCAAGGAGATGCCATGGAACAAGGTGCAAGAAGCTTTGGC 8763 ||||||||| ||| |||||| || || || |||| | ||||| || | || Sbjct 840490 TGCCGCCATAGGATCATGGAGCCGCGATATCCCCTGGAGAGATGTGCAGGAGGTGGTGCA 840549 Query 8764 TGACCCTGTCTTTTGGCGTATGGT-GGCTGATGAACGCGCTCGGCACCTGCGTGGAGATT 8822 |||| ||| ||| | | || ||| || || || |||| || |||| || | | Sbjct 840550 AGACCAGTCCTTCTGGAATCTTGTTGGCCGA-GAGCGTGCTCTACATCTGCAAGGGAAAT 840608 Query 8823 GTGAGTTGTGCGTGTTCAACACAATGGGCAAGAAGGAGAAGAAGCCGTCCTCTTTCGGCG 8882 | | |||| | | || || ||||| || || || |||||||| | || | Sbjct 840609 GCAATATGTGTCTCTATAATACTATGGGGAAAAAAGAAAAGAAGCCCGGAGTTGCTGGTG 840668 Query 8883 AGGCACGAGGATCAAGGATTATCTGGTACATGTGGCTCGGAAGTCGGTTTTTGGAGTACG 8942 ||||| ||||| ||| ||||||||| ||||||||||| || | || |||||||||| Sbjct 840669 AGGCAAAGGGATCTCGGACTATCTGGTATATGTGGCTCGGGAGCAGATTCTTGGAGTACG 840728 Query 8943 AAGCACTTGGATTCCTAAACGAGGACCATTGGGT-AGCGAGGAAGAACTTTCCGTGCGGA 9001 |||| || | ||||| |||| ||||| ||||| ||| | |||| || || | ||| Sbjct 840729 AAGCGCTGGCGTTCCTGAACGCAGACCACTGGGTCAGC-CGTGAGAATTTCCCCGGAGGA 840787 Query 9002 GTTGGCGGGGTCGGAGTGAATTACTTTGGATACTATCTCCAGGAAA--TCATGCAAAAAG 9059 |||||||| || || || || || ||||| | |||||| |||| | || ||| |||| Sbjct 840788 GTTGGCGGTGTTGGCGTCAACTATTTTGGCAATTATCTCAAGGAGATTTCCTGC--AAAG 840845 Query 9060 GTAAGTGGATGATTGCTGATGACACCGCCGGTGGGGACAC 9099 | |||| | |||| ||||||| || ||| ||||||| Sbjct 840846 GAAAGTACCTCTTTGCGGATGACATTGCTGGTTGGGACAC 840885 >seq570 Length=1853759 Score = 107 bits (118), Expect = 1e-19 Identities = 237/350 (68%), Gaps = 9/350 (3%) Strand=Plus/Minus Query 9684 GAGCACGGATCCAGAAAGGGGGGATCGTGGACATGTCAGCTGC---CGGGTGCTTAGCAA 9740 ||||| || |||||||||| || ||||| | | ||||| || || | || | Sbjct 12484 GAGCA-GGCTCCAGAAAGGAGGTCTCGTGAGCTT---AGCTGAGAGCGCCTGTATGGCCA 12429 Query 9741 AGGCACATGCCCAAATGTGGGCATTGTACTACTTCCACCGGAGGGACTTGCGGCTCGGAT 9800 |||| | || ||||||||||| | || | ||| ||||| |||| | || | || | Sbjct 12428 AGGCCTACGCACAAATGTGGGCCCTATATTTCTTTCACCGTCGGGATCAGAGGTTGGGGT 12369 Query 9801 TTGCCGCTATCACGTCGGC-CGTCCCGGTGAACTGGATCCCCACGGGGCGGATATCGTGG 9859 | ||||| |||||||| |||| || | ||| | || |||||| | ||| ||| Sbjct 12368 TCTGTGCTATAACGTCGGCGATTCCCTCTG-ATTGGTTTCCTGTGGGGCGAACATCTTGG 12310 Query 9860 TCAGTCCACCAACACGCTGAATGGATGACGACACAGGACATGCTAGAAGTGTGGAACACC 9919 || ||||||| | ||| |||||||| || | || |||||| ||||||||| | Sbjct 12309 TCCATCCACCAGAATCATGAGTGGATGACCACTGATGATATGCTACGAGTGTGGAATGAC 12250 Query 9920 GTGTGGATTGTCAACAACCCATGGATGGCAGTGAAAGACCCAGTGAAGACATGGTCAGAG 9979 || |||||| ||||||||| ||| | || ||||| ||||| | | | ||| || Sbjct 12249 GTTTGGATTAGCAACAACCCGTGGGTTGCGACTAAAGAGCCAGTCATGTCGTGGGATGAA 12190 Query 9980 ATACCATACCTCCCGAAGACGAAGGACATAAATTGTGGAAGTTTGATTGG 10029 || || ||| | | |||| | | |||||| ||||| ||| | || || Sbjct 12189 ATCCCGTACTTGCATAAGAAGCAAGACATAGCGTGTGGTAGTCTCATAGG 12140 Score = 93.3 bits (102), Expect = 3e-15 Identities = 165/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 8903 ATCTGGTACATGTGGCTCGGAAGTCGGTTTTTGGAGTACGAAGCACTTGGATTCCTAAAC 8962 || |||||||||||||| || | |||| | || | ||||| ||||| ||||| ||| Sbjct 258048 ATTTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTTGGCTTCCTCAAC 258107 Query 8963 GAGGACCATTGGG-TAG-CGAGGAAGAACTTTCCGTGCGGAGTTGGCGGGGTCGGAGTGA 9020 | ||||| |||| ||| || | ||||||| ||| | ||||| || || || || || | Sbjct 258108 GCTGACCACTGGGTTAGTCGCG--AGAACTTCCCGGGAGGAGTAGGGGGAGTTGGGGTCA 258165 Query 9021 ATTACTTTGGATACTATCTCCAGGAAATCATGCAAAAA--GGTAAGTGGATGATTGCTGA 9078 | |||||||| | ||| | | || ||| ||||||| || || | | | || || Sbjct 258166 ACTACTTTGGGAATTATTTGAAAGACATC--GCAAAAAGGGGAAAATTTTTATTCGCCGA 258223 Query 9079 TGACACCGCCGGTGGGGACACGCGCATAA---CTGAAGCTGACCTGGAGGACGA 9129 ||||| || || ||||||| || || | ||||| || ||||||||||| Sbjct 258224 TGACATTGCTGGATGGGACACTCGTATTAGCTCTGAA---GATCTGGAGGACGA 258274 >seq65 Length=4361017 Score = 104 bits (114), Expect = 2e-18 Identities = 236/350 (67%), Gaps = 9/350 (3%) Strand=Plus/Minus Query 9684 GAGCACGGATCCAGAAAGGGGGGATCGTGGACATGTCAGCTGC---CGGGTGCTTAGCAA 9740 ||||| || |||||||| | || ||||| | | ||||| || ||| | || | Sbjct 2220051 GAGCA-GGCTCCAGAAAAGAGGTCTCGTGAGCTT---AGCTGAGAGCGCCTGCATGGCCA 2219996 Query 9741 AGGCACATGCCCAAATGTGGGCATTGTACTACTTCCACCGGAGGGACTTGCGGCTCGGAT 9800 |||| | || ||||||||||| | || | ||| ||||| |||| | || | || | Sbjct 2219995 AGGCCTACGCACAAATGTGGGCCCTATATTTCTTTCACCGTCGGGATCAGAGGTTGGGGT 2219936 Query 9801 TTGCCGCTATCACGTCGGC-CGTCCCGGTGAACTGGATCCCCACGGGGCGGATATCGTGG 9859 | ||||| |||||||| |||| || | ||| | || |||||| | ||| ||| Sbjct 2219935 TCTGTGCTATAACGTCGGCGATTCCCTCTG-ATTGGTTTCCTGTGGGGCGAACATCTTGG 2219877 Query 9860 TCAGTCCACCAACACGCTGAATGGATGACGACACAGGACATGCTAGAAGTGTGGAACACC 9919 || ||||||| | ||| |||||||| || | || |||||| ||||||||| | Sbjct 2219876 TCCATCCACCAGAATCATGAGTGGATGACCACTGATGATATGCTACGAGTGTGGAATGAC 2219817 Query 9920 GTGTGGATTGTCAACAACCCATGGATGGCAGTGAAAGACCCAGTGAAGACATGGTCAGAG 9979 || |||||| |||||||| ||| | || ||||| ||||| | | | ||| || Sbjct 2219816 GTTTGGATTAGCAACAACCTGTGGGTTGCGACTAAAGAGCCAGTCATGTCGTGGGATGAA 2219757 Query 9980 ATACCATACCTCCCGAAGACGAAGGACATAAATTGTGGAAGTTTGATTGG 10029 || || ||| | | |||| | | |||||| ||||| ||| | || || Sbjct 2219756 ATCCCGTACTTGCATAAGAAGCAAGACATAGCGTGTGGTAGTCTCATAGG 2219707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34562253184340